Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDH11P55287 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CDH11P55287 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CDH11P55287 AC136759.1-202ENST00000530858 2194 ntBASIC13.86□□□□□ -0.19
CDH11P55287 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDH11P55287 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CDH11P55287 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CDH11P55287 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDH11P55287 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CDH11P55287 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDH11P55287 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.86□□□□□ -0.19
CDH11P55287 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CDH11P55287 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDH11P55287 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.85□□□□□ -0.19
CDH11P55287 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CDH11P55287 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
CDH11P55287 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.85□□□□□ -0.19
CDH11P55287 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 SPDYE19P-201ENST00000338590 713 ntBASIC13.85□□□□□ -0.19
CDH11P55287 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.85□□□□□ -0.19
CDH11P55287 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.85□□□□□ -0.19
CDH11P55287 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.85□□□□□ -0.19
CDH11P55287 DFFBP1-201ENST00000433250 979 ntBASIC13.85□□□□□ -0.19
CDH11P55287 GNAQP1-201ENST00000444815 1067 ntBASIC13.85□□□□□ -0.19
CDH11P55287 GAPDHP21-201ENST00000450301 1010 ntBASIC13.85□□□□□ -0.19
CDH11P55287 SLED1-202ENST00000512051 380 ntBASIC13.85□□□□□ -0.19
CDH11P55287 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.85□□□□□ -0.19
CDH11P55287 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 AP001267.2-201ENST00000532619 2086 ntBASIC13.85□□□□□ -0.19
CDH11P55287 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.85□□□□□ -0.19
CDH11P55287 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.85□□□□□ -0.19
CDH11P55287 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.85□□□□□ -0.19
CDH11P55287 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.85□□□□□ -0.19
CDH11P55287 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
CDH11P55287 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDH11P55287 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CDH11P55287 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
CDH11P55287 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.84□□□□□ -0.19
CDH11P55287 AC007787.1-201ENST00000588095 1583 ntBASIC13.84□□□□□ -0.19
CDH11P55287 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CDH11P55287 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.84□□□□□ -0.19
CDH11P55287 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.84□□□□□ -0.19
CDH11P55287 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.84□□□□□ -0.19
CDH11P55287 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC13.84□□□□□ -0.19
CDH11P55287 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC13.84□□□□□ -0.19
CDH11P55287 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.84□□□□□ -0.19
CDH11P55287 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.84□□□□□ -0.19
CDH11P55287 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.84□□□□□ -0.19
CDH11P55287 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC13.84□□□□□ -0.19
CDH11P55287 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.84□□□□□ -0.19
CDH11P55287 AC093004.1-201ENST00000508850 424 ntBASIC13.84□□□□□ -0.19
CDH11P55287 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC13.84□□□□□ -0.19
CDH11P55287 AL109936.8-201ENST00000641772 604 ntBASIC13.84□□□□□ -0.19
CDH11P55287 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.84□□□□□ -0.19
CDH11P55287 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDH11P55287 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.84□□□□□ -0.19
CDH11P55287 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms