Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.66■□□□□ 0.1
CDH6P55285 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.66■□□□□ 0.1
CDH6P55285 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.66■□□□□ 0.1
CDH6P55285 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.66■□□□□ 0.1
CDH6P55285 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.66■□□□□ 0.1
CDH6P55285 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.66■□□□□ 0.1
CDH6P55285 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 ACKR1-201ENST00000368121 1240 ntBASIC15.66■□□□□ 0.1
CDH6P55285 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.66■□□□□ 0.1
CDH6P55285 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.66■□□□□ 0.1
CDH6P55285 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.66■□□□□ 0.1
CDH6P55285 GIMAP3P-201ENST00000495150 836 ntBASIC15.66■□□□□ 0.1
CDH6P55285 KRT18P25-201ENST00000508931 1278 ntBASIC15.66■□□□□ 0.1
CDH6P55285 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.66■□□□□ 0.1
CDH6P55285 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.66■□□□□ 0.1
CDH6P55285 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.66■□□□□ 0.1
CDH6P55285 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.66■□□□□ 0.1
CDH6P55285 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.66■□□□□ 0.1
CDH6P55285 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.66■□□□□ 0.1
CDH6P55285 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CDH6P55285 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.66■□□□□ 0.1
CDH6P55285 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CDH6P55285 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 AC097359.2-201ENST00000604992 2389 ntBASIC15.65■□□□□ 0.1
CDH6P55285 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.65■□□□□ 0.1
CDH6P55285 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.65■□□□□ 0.1
CDH6P55285 ACTBP8-201ENST00000403258 1108 ntBASIC15.65■□□□□ 0.1
CDH6P55285 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.65■□□□□ 0.1
CDH6P55285 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 AC093433.1-201ENST00000458048 571 ntBASIC15.65■□□□□ 0.1
CDH6P55285 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 AC005089.1-201ENST00000619486 2241 ntBASIC15.65■□□□□ 0.1
CDH6P55285 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH6P55285 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 KRT8P35-201ENST00000483942 1338 ntBASIC15.65■□□□□ 0.1
CDH6P55285 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
CDH6P55285 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CDH6P55285 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CDH6P55285 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH6P55285 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH6P55285 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH6P55285 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH6P55285 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH6P55285 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH6P55285 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH6P55285 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms