Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 BEND3P1-201ENST00000421591 1944 ntBASIC13.31□□□□□ -0.28
SOX2P48431 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SOX2P48431 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC13.31□□□□□ -0.28
SOX2P48431 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
SOX2P48431 AL157414.3-201ENST00000624276 1954 ntBASIC13.31□□□□□ -0.28
SOX2P48431 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX2P48431 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX2P48431 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.3□□□□□ -0.28
SOX2P48431 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.3□□□□□ -0.28
SOX2P48431 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.3□□□□□ -0.28
SOX2P48431 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX2P48431 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX2P48431 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 AC004835.2-201ENST00000603762 682 ntBASIC13.3□□□□□ -0.28
SOX2P48431 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX2P48431 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX2P48431 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
SOX2P48431 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX2P48431 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SOX2P48431 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX2P48431 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX2P48431 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX2P48431 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX2P48431 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX2P48431 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX2P48431 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
SOX2P48431 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.29□□□□□ -0.28
SOX2P48431 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC13.29□□□□□ -0.28
SOX2P48431 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 RPL37AP1-201ENST00000412502 279 ntBASIC13.29□□□□□ -0.28
SOX2P48431 SPDYE7P-202ENST00000420373 878 ntBASIC13.29□□□□□ -0.28
SOX2P48431 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC13.29□□□□□ -0.28
SOX2P48431 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.29□□□□□ -0.28
SOX2P48431 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX2P48431 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SOX2P48431 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.29□□□□□ -0.28
SOX2P48431 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC13.29□□□□□ -0.28
SOX2P48431 AC009093.7-201ENST00000623853 1223 ntBASIC13.29□□□□□ -0.28
SOX2P48431 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX2P48431 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms