Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
MSH3P20585 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.01□□□□□ -0.01
MSH3P20585 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.01□□□□□ -0.01
MSH3P20585 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.01□□□□□ -0.01
MSH3P20585 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.01□□□□□ -0.01
MSH3P20585 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.01□□□□□ -0.01
MSH3P20585 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.01□□□□□ -0.01
MSH3P20585 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.01□□□□□ -0.01
MSH3P20585 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
MSH3P20585 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
MSH3P20585 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
MSH3P20585 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
MSH3P20585 ACE3P-201ENST00000423435 1973 ntBASIC15.01□□□□□ -0.01
MSH3P20585 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.01□□□□□ -0.01
MSH3P20585 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 AJ011931.1-201ENST00000618749 2492 ntBASIC15.01□□□□□ -0.01
MSH3P20585 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
MSH3P20585 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
MSH3P20585 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15□□□□□ -0.01
MSH3P20585 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15□□□□□ -0.01
MSH3P20585 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15□□□□□ -0.01
MSH3P20585 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15□□□□□ -0.01
MSH3P20585 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
MSH3P20585 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15□□□□□ -0.01
MSH3P20585 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15□□□□□ -0.01
MSH3P20585 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15□□□□□ -0.01
MSH3P20585 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
MSH3P20585 C2orf27AP3-201ENST00000434123 579 ntBASIC15□□□□□ -0.01
MSH3P20585 EIF3FP3-201ENST00000434851 1086 ntBASIC15□□□□□ -0.01
MSH3P20585 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15□□□□□ -0.01
MSH3P20585 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15□□□□□ -0.01
MSH3P20585 AL354718.3-201ENST00000616414 581 ntBASIC15□□□□□ -0.01
MSH3P20585 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15□□□□□ -0.01
MSH3P20585 CR382287.1-201ENST00000623954 586 ntBASIC15□□□□□ -0.01
MSH3P20585 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
MSH3P20585 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
MSH3P20585 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15□□□□□ -0.01
MSH3P20585 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
MSH3P20585 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSH3P20585 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.99□□□□□ -0.01
MSH3P20585 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.99□□□□□ -0.01
MSH3P20585 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.99□□□□□ -0.01
MSH3P20585 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.99□□□□□ -0.01
MSH3P20585 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
MSH3P20585 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.99□□□□□ -0.01
MSH3P20585 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
MSH3P20585 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
MSH3P20585 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.99□□□□□ -0.01
MSH3P20585 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.99□□□□□ -0.01
MSH3P20585 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 144.2 ms