Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TCF3-215ENST00000590684 1313 ntTSL 321.73■■□□□ 1.071e-10■□□□□ 9.4
YBX3P16989 TCF3-214ENST00000590605 541 ntTSL 219.67■□□□□ 0.741e-10■□□□□ 9.4
YBX3P16989 TCF3-209ENST00000586410 288 ntTSL 517.53■□□□□ 0.41e-10■□□□□ 9.4
YBX3P16989 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.321e-10■□□□□ 9.4
YBX3P16989 SAT1-201ENST00000379251 801 ntTSL 2 BASIC17.8■□□□□ 0.445e-16■□□□□ 9.4
YBX3P16989 SAT1-202ENST00000379253 909 ntTSL 2 BASIC17.8■□□□□ 0.445e-16■□□□□ 9.4
YBX3P16989 CSDE1-216ENST00000534389 601 ntTSL 43.46□□□□□ -1.862e-8■□□□□ 9.4
YBX3P16989 SETD3-206ENST00000453764 973 ntTSL 525.56■■□□□ 1.682e-9■□□□□ 9.4
YBX3P16989 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC25.06■■□□□ 1.62e-9■□□□□ 9.4
YBX3P16989 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC23.82■■□□□ 1.42e-9■□□□□ 9.4
YBX3P16989 SETD3-203ENST00000357563 2191 ntTSL 523.01■■□□□ 1.272e-9■□□□□ 9.4
YBX3P16989 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.16■■□□□ 1.143e-6■□□□□ 9.4
YBX3P16989 SPTBN2-202ENST00000527010 859 ntTSL 220.07■□□□□ 0.82e-9■□□□□ 9.4
YBX3P16989 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.492e-9■□□□□ 9.4
YBX3P16989 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.283e-6■□□□□ 9.4
YBX3P16989 KIF2C-205ENST00000455186 908 ntTSL 516.22■□□□□ 0.191e-10■□□□□ 9.4
YBX3P16989 HMBS-219ENST00000544182 1542 ntTSL 215.59■□□□□ 0.092e-9■□□□□ 9.4
YBX3P16989 GTPBP1-204ENST00000460605 581 ntTSL 315.43■□□□□ 0.062e-9■□□□□ 9.4
YBX3P16989 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC15.34■□□□□ 0.052e-9■□□□□ 9.4
YBX3P16989 SETD3-205ENST00000446066 1754 ntTSL 515.27■□□□□ 0.042e-9■□□□□ 9.4
YBX3P16989 KIF2C-207ENST00000480574 783 ntTSL 514.6□□□□□ -0.071e-10■□□□□ 9.4
YBX3P16989 GTPBP1-208ENST00000475959 475 ntTSL 214.59□□□□□ -0.072e-9■□□□□ 9.4
YBX3P16989 MYO1D-206ENST00000579584 3500 ntTSL 2 BASIC14.4□□□□□ -0.13e-6■□□□□ 9.4
YBX3P16989 HMBS-210ENST00000539045 845 ntTSL 213.98□□□□□ -0.172e-9■□□□□ 9.4
YBX3P16989 MYO1D-202ENST00000394649 5451 ntTSL 5 BASIC13.25□□□□□ -0.293e-6■□□□□ 9.4
YBX3P16989 PFKFB4-212ENST00000478516 579 ntTSL 310.75□□□□□ -0.692e-9■□□□□ 9.4
YBX3P16989 DEK-205ENST00000507591 739 ntTSL 210.54□□□□□ -0.722e-9■□□□□ 9.4
YBX3P16989 KIF2C-204ENST00000452259 1124 ntTSL 59.59□□□□□ -0.871e-10■□□□□ 9.4
YBX3P16989 SETD3-207ENST00000453938 545 ntTSL 48.11□□□□□ -1.112e-9■□□□□ 9.4
YBX3P16989 KIF2C-208ENST00000493027 1091 ntTSL 57.52□□□□□ -1.211e-10■□□□□ 9.4
YBX3P16989 PLCG1-215ENST00000608689 969 ntTSL 519.25■□□□□ 0.675e-7■□□□□ 9.4
YBX3P16989 PLCG1-204ENST00000461641 936 ntTSL 517.76■□□□□ 0.435e-7■□□□□ 9.4
YBX3P16989 PLCG1-219ENST00000612731 544 ntTSL 315.82■□□□□ 0.125e-7■□□□□ 9.4
YBX3P16989 PLCG1-213ENST00000599785 880 ntTSL 59.98□□□□□ -0.815e-7■□□□□ 9.4
YBX3P16989 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.359e-9■□□□□ 9.4
YBX3P16989 RPL26L1-202ENST00000519156 493 ntTSL 1 (best)14.68□□□□□ -0.069e-9■□□□□ 9.4
YBX3P16989 RPL26L1-201ENST00000265100 722 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.319e-9■□□□□ 9.4
YBX3P16989 RPL26L1-206ENST00000521476 742 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.319e-9■□□□□ 9.4
YBX3P16989 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.199e-9■□□□□ 9.4
YBX3P16989 KXD1-210ENST00000599000 498 ntTSL 2 BASIC15.7■□□□□ 0.11e-6■□□□□ 9.4
YBX3P16989 KXD1-209ENST00000598830 932 ntTSL 2 BASIC13.61□□□□□ -0.231e-6■□□□□ 9.4
YBX3P16989 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.38e-10■□□□□ 9.4
YBX3P16989 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.238e-10■□□□□ 9.4
YBX3P16989 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC14.72□□□□□ -0.058e-10■□□□□ 9.4
YBX3P16989 TMEM248-206ENST00000484751 739 ntTSL 28.8□□□□□ -16e-9■□□□□ 9.4
YBX3P16989 XPO5-210ENST00000496341 800 ntTSL 55.57□□□□□ -1.523e-9■□□□□ 9.4
YBX3P16989 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.655e-9■□□□□ 9.4
YBX3P16989 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.415e-9■□□□□ 9.4
YBX3P16989 BSCL2-227ENST00000537604 691 ntTSL 317.66■□□□□ 0.422e-6■□□□□ 9.4
YBX3P16989 BSCL2-222ENST00000530900 398 ntTSL 317.05■□□□□ 0.322e-6■□□□□ 9.4
YBX3P16989 RPS27A-205ENST00000463185 590 ntTSL 1 (best)27.93■■■□□ 2.065e-12■□□□□ 9.4
YBX3P16989 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC25.3■■□□□ 1.642e-13■□□□□ 9.4
YBX3P16989 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.085e-12■□□□□ 9.4
YBX3P16989 RPS27A-203ENST00000404735 796 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.055e-12■□□□□ 9.4
YBX3P16989 RPS27A-209ENST00000494756 535 ntTSL 214.74□□□□□ -0.055e-12■□□□□ 9.4
YBX3P16989 RPS27A-202ENST00000402285 705 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.365e-12■□□□□ 9.4
YBX3P16989 RPS27A-207ENST00000471772 557 ntTSL 210.14□□□□□ -0.795e-12■□□□□ 9.4
YBX3P16989 RPS27A-208ENST00000478196 580 ntTSL 27.5□□□□□ -1.215e-12■□□□□ 9.4
YBX3P16989 RPS27A-204ENST00000449323 422 ntTSL 36.51□□□□□ -1.375e-12■□□□□ 9.4
YBX3P16989 RPL13A-203ENST00000468655 407 ntTSL 213.36□□□□□ -0.271e-323■□□□□ 9.4
YBX3P16989 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.432e-9■□□□□ 9.4
YBX3P16989 DNPEP-204ENST00000373966 1875 ntTSL 527.17■■□□□ 1.942e-9■□□□□ 9.4
YBX3P16989 DNPEP-203ENST00000373963 1657 ntTSL 526.26■■□□□ 1.792e-9■□□□□ 9.4
YBX3P16989 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC23.63■■□□□ 1.372e-9■□□□□ 9.4
YBX3P16989 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.612e-9■□□□□ 9.4
YBX3P16989 DNPEP-205ENST00000373972 1578 ntTSL 2 BASIC16.53■□□□□ 0.242e-9■□□□□ 9.4
YBX3P16989 DNPEP-220ENST00000523282 1662 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.092e-9■□□□□ 9.4
YBX3P16989 DNPEP-214ENST00000490371 555 ntTSL 514.5□□□□□ -0.092e-9■□□□□ 9.4
YBX3P16989 UTP6-206ENST00000579459 410 ntTSL 39.4□□□□□ -0.92e-9■□□□□ 9.4
YBX3P16989 UTP6-208ENST00000581012 563 ntTSL 58.97□□□□□ -0.972e-9■□□□□ 9.4
YBX3P16989 UTP6-202ENST00000477128 2344 ntTSL 27.57□□□□□ -1.22e-9■□□□□ 9.4
YBX3P16989 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.212e-9■□□□□ 9.4
YBX3P16989 EIF4A1-227ENST00000583217 599 ntTSL 213.4□□□□□ -0.267e-12■□□□□ 9.4
YBX3P16989 RBM23-202ENST00000346528 2361 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.433e-8■□□□□ 9.4
YBX3P16989 RBM23-215ENST00000555209 2278 ntTSL 1 (best) BASIC11.87□□□□□ -0.513e-8■□□□□ 9.4
YBX3P16989 RBM23-204ENST00000399922 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.73e-8■□□□□ 9.4
YBX3P16989 RBM23-233ENST00000557667 4240 ntTSL 1 (best)8.9□□□□□ -0.983e-8■□□□□ 9.4
YBX3P16989 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC7.62□□□□□ -1.193e-8■□□□□ 9.4
YBX3P16989 HMBS-223ENST00000545901 581 ntTSL 1 (best)21.77■■□□□ 1.083e-9■□□□□ 9.4
YBX3P16989 YES1-205ENST00000584307 4639 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.979e-7■□□□□ 9.4
YBX3P16989 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.019e-7■□□□□ 9.4
YBX3P16989 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.64□□□□□ -1.359e-7■□□□□ 9.4
YBX3P16989 GTF3C5-207ENST00000440319 920 ntTSL 516.55■□□□□ 0.242e-7■□□□□ 9.4
YBX3P16989 GTF3C5-206ENST00000439697 823 ntTSL 315.85■□□□□ 0.132e-7■□□□□ 9.4
YBX3P16989 CERS2-203ENST00000361419 997 ntTSL 240.69■■■■■ 4.11e-9■□□□□ 9.4
YBX3P16989 ANPEP-208ENST00000560030 896 ntTSL 520.25■□□□□ 0.831e-7■□□□□ 9.4
YBX3P16989 ANPEP-202ENST00000558177 918 ntTSL 311.36□□□□□ -0.591e-7■□□□□ 9.4
YBX3P16989 ANPEP-204ENST00000559761 469 ntTSL 211.25□□□□□ -0.611e-7■□□□□ 9.4
YBX3P16989 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC16.96■□□□□ 0.317e-13■□□□□ 9.4
YBX3P16989 RPLP1-203ENST00000487304 1962 ntTSL 513.94□□□□□ -0.187e-13■□□□□ 9.4
YBX3P16989 RPLP1-201ENST00000260379 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.37e-13■□□□□ 9.4
YBX3P16989 RPLP1-205ENST00000560274 256 ntTSL 3 BASIC11.03□□□□□ -0.647e-13■□□□□ 9.4
YBX3P16989 ATP5O-208ENST00000491703 2839 ntTSL 214.06□□□□□ -0.165e-73■□□□□ 9.4
YBX3P16989 ATP5O-201ENST00000290299 932 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.195e-73■□□□□ 9.4
YBX3P16989 AP000311.1-201ENST00000429238 1078 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.215e-73■□□□□ 9.4
YBX3P16989 ATP5O-205ENST00000431254 583 ntTSL 213.49□□□□□ -0.255e-73■□□□□ 9.4
YBX3P16989 ATP5O-204ENST00000429064 442 ntTSL 38.82□□□□□ -15e-73■□□□□ 9.4
YBX3P16989 ATP5O-202ENST00000417181 462 ntTSL 37.98□□□□□ -1.135e-73■□□□□ 9.4
YBX3P16989 ATP5O-203ENST00000418933 415 ntTSL 57.98□□□□□ -1.135e-73■□□□□ 9.4
YBX3P16989 UBA1-208ENST00000457753 809 ntTSL 523.56■■□□□ 1.362e-10■□□□□ 9.4
Retrieved 100 of 29,075 protein–RNA pairs in 147.6 ms