RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 AEBP2Q6ZN18 517 aaPredicted RBP12.45□□□□□ -0.42
CSDE1-216ENST00000534389 CHIC1Q5VXU3 224 aa12.16□□□□□ -0.46
CSDE1-216ENST00000534389 PHF23Q9BUL5 403 aaPredicted RBP10.7□□□□□ -0.7
CSDE1-216ENST00000534389 SENP3Q9H4L4 574 aaPredicted RBP10.56□□□□□ -0.72
CSDE1-216ENST00000534389 POTEDQ86YR6 584 aa10.42□□□□□ -0.74
CSDE1-216ENST00000534389 PLPPR3Q6T4P5 718 aa9.87□□□□□ -0.83
CSDE1-216ENST00000534389 FOXD1Q16676 465 aa9.79□□□□□ -0.84
CSDE1-216ENST00000534389 ADRA2BP18089 450 aa9.44□□□□□ -0.9
CSDE1-216ENST00000534389 PPP6R1Q9UPN7 881 aa9.43□□□□□ -0.9
CSDE1-216ENST00000534389 PIAS4Q8N2W9 510 aaPredicted RBP9.26□□□□□ -0.93
CSDE1-216ENST00000534389 MSH5O43196 834 aa9.02□□□□□ -0.97
CSDE1-216ENST00000534389 PPP4R3CPQ6ZMV5 832 aa8.71□□□□□ -1.02
CSDE1-216ENST00000534389 SCAF1Q9H7N4 1312 aaKnown RBP8.6□□□□□ -1.03
CSDE1-216ENST00000534389 MAPK8IP2Q13387 824 aaPredicted RBP8.56□□□□□ -1.04
CSDE1-216ENST00000534389 KCNA4P22459 653 aa8.53□□□□□ -1.04
CSDE1-216ENST00000534389 NCBP3Q53F19 620 aaKnown RBP8.48□□□□□ -1.05
CSDE1-216ENST00000534389 CNKSR2Q8WXI2 1034 aa8.45□□□□□ -1.06
CSDE1-216ENST00000534389 DMRT2Q9Y5R5 561 aa8.42□□□□□ -1.06
CSDE1-216ENST00000534389 NPM3O75607 178 aaKnown RBP8.36□□□□□ -1.07
CSDE1-216ENST00000534389 RNF216Q9NWF9 866 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-216ENST00000534389 HOXD11P31277 338 aaPredicted RBP8.25□□□□□ -1.09
CSDE1-216ENST00000534389 SLC4A1APQ9BWU0 796 aaKnown RBP8.19□□□□□ -1.1
CSDE1-216ENST00000534389 EHMT2Q96KQ7 1210 aa8.18□□□□□ -1.1
CSDE1-216ENST00000534389 DCAF8L1A6NGE4 600 aa8.09□□□□□ -1.11
CSDE1-216ENST00000534389 DNAJC5BQ9UF47 199 aa8.07□□□□□ -1.12
CSDE1-216ENST00000534389 SLC4A2P04920 1241 aa7.89□□□□□ -1.15
CSDE1-216ENST00000534389 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.88□□□□□ -1.151e-10■□□□□ 8.8
CSDE1-216ENST00000534389 CSRNP3Q8WYN3 585 aa7.86□□□□□ -1.15
CSDE1-216ENST00000534389 ZBTB22O15209 634 aa7.85□□□□□ -1.15
CSDE1-216ENST00000534389 FOXD4L1Q9NU39 408 aa7.84□□□□□ -1.15
CSDE1-216ENST00000534389 POTEHQ6S545 545 aa7.82□□□□□ -1.16
CSDE1-216ENST00000534389 U3KPZ7 1027 aaPredicted RBP7.76□□□□□ -1.17
CSDE1-216ENST00000534389 RNF39Q9H2S5 420 aa7.74□□□□□ -1.17
CSDE1-216ENST00000534389 MYCNP04198 464 aaPredicted RBP7.73□□□□□ -1.17
CSDE1-216ENST00000534389 CACNB1Q02641 598 aaPredicted RBP7.67□□□□□ -1.18
CSDE1-216ENST00000534389 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.64□□□□□ -1.19
CSDE1-216ENST00000534389 HNRNPUL2Q1KMD3 747 aaKnown RBP7.64□□□□□ -1.19
CSDE1-216ENST00000534389 C1QBPQ07021 282 aaKnown RBP7.63□□□□□ -1.19
CSDE1-216ENST00000534389 SAMD1Q6SPF0 538 aaPredicted RBP7.61□□□□□ -1.19
CSDE1-216ENST00000534389 APLP2Q06481 763 aa7.55□□□□□ -1.2
CSDE1-216ENST00000534389 ATXN8OSP0DMR3 200 aa7.54□□□□□ -1.2
CSDE1-216ENST00000534389 SPINK5Q9NQ38 1064 aaPredicted RBP7.54□□□□□ -1.2
CSDE1-216ENST00000534389 ATF5Q9Y2D1 282 aaPredicted RBP7.53□□□□□ -1.2
CSDE1-216ENST00000534389 CAPN15O75808 1086 aa7.51□□□□□ -1.21
CSDE1-216ENST00000534389 TRHP20396 242 aaPredicted RBP7.48□□□□□ -1.21
CSDE1-216ENST00000534389 ZNF219Q9P2Y4 722 aaPredicted RBP7.46□□□□□ -1.22
CSDE1-216ENST00000534389 ABCB7O75027 752 aa7.38□□□□□ -1.23
CSDE1-216ENST00000534389 DSG3P32926 999 aa7.37□□□□□ -1.23
CSDE1-216ENST00000534389 POLA2Q14181 598 aa7.35□□□□□ -1.23
CSDE1-216ENST00000534389 PLSCR2Q9NRY7 297 aa7.29□□□□□ -1.24
CSDE1-216ENST00000534389 FKBP8Q14318 412 aa7.22□□□□□ -1.25
CSDE1-216ENST00000534389 ZBTB12Q9Y330 459 aaPredicted RBP7.21□□□□□ -1.26
CSDE1-216ENST00000534389 FBLN2P98095 1184 aa7.2□□□□□ -1.26
CSDE1-216ENST00000534389 MKRN4PQ13434 485 aaPredicted RBP7.2□□□□□ -1.26
CSDE1-216ENST00000534389 OSCARQ8IYS5 282 aa7.12□□□□□ -1.27
CSDE1-216ENST00000534389 SPDYE4A6NLX3 237 aa7.05□□□□□ -1.28
CSDE1-216ENST00000534389 SPDYE2BA6NHP3 402 aa7.02□□□□□ -1.29
CSDE1-216ENST00000534389 SPDYE6P0CI01 402 aa7.02□□□□□ -1.29
CSDE1-216ENST00000534389 SPDYE2Q495Y8 402 aa7.02□□□□□ -1.29
CSDE1-216ENST00000534389 RBM42Q9BTD8 480 aaKnown RBP7.01□□□□□ -1.29
CSDE1-216ENST00000534389 ZNF692Q9BU19 519 aaPredicted RBP7□□□□□ -1.29
CSDE1-216ENST00000534389 SSUH2Q9Y2M2 353 aa6.97□□□□□ -1.29
CSDE1-216ENST00000534389 FBXO3Q9UK99 471 aa6.96□□□□□ -1.3
CSDE1-216ENST00000534389 AKT1S1Q96B36 256 aa6.93□□□□□ -1.3
CSDE1-216ENST00000534389 PABPN1Q86U42 306 aaKnown RBP eCLIP6.92□□□□□ -1.3
CSDE1-216ENST00000534389 PROM2Q8N271 834 aa6.9□□□□□ -1.3
CSDE1-216ENST00000534389 REM2Q8IYK8 340 aaPredicted RBP6.87□□□□□ -1.31
CSDE1-216ENST00000534389 AMER1Q5JTC6 1135 aaPredicted RBP6.84□□□□□ -1.31
CSDE1-216ENST00000534389 SPDYE1Q8NFV5 336 aaPredicted RBP6.82□□□□□ -1.32
CSDE1-216ENST00000534389 PITPNM1O00562 1244 aa6.81□□□□□ -1.32
CSDE1-216ENST00000534389 CLEC11AQ9Y240 323 aa6.81□□□□□ -1.32
CSDE1-216ENST00000534389 VASPP50552 380 aaPredicted RBP6.79□□□□□ -1.32
CSDE1-216ENST00000534389 PLEKHG5O94827 1062 aa6.78□□□□□ -1.32
CSDE1-216ENST00000534389 KLHL34Q8N239 644 aa6.78□□□□□ -1.32
CSDE1-216ENST00000534389 STAG3Q9UJ98 1225 aa6.78□□□□□ -1.32
CSDE1-216ENST00000534389 PLCD3Q8N3E9 789 aa6.77□□□□□ -1.33
CSDE1-216ENST00000534389 RTN4Q9NQC3 1192 aaKnown RBP6.76□□□□□ -1.33
CSDE1-216ENST00000534389 MIER1Q8N108 512 aa6.74□□□□□ -1.33
CSDE1-216ENST00000534389 PRR29P0C7W0 189 aa6.73□□□□□ -1.33
CSDE1-216ENST00000534389 CHRDL2Q6WN34 429 aa6.73□□□□□ -1.33
CSDE1-216ENST00000534389 DCAF8L2P0C7V8 631 aa6.67□□□□□ -1.34
CSDE1-216ENST00000534389 ZBTB47Q9UFB7 747 aaPredicted RBP6.67□□□□□ -1.34
CSDE1-216ENST00000534389 PIP4P2Q8N4L2 257 aa6.66□□□□□ -1.34
CSDE1-216ENST00000534389 FXR2P51116 673 aaKnown RBP eCLIP6.65□□□□□ -1.34
CSDE1-216ENST00000534389 IFNLR1Q8IU57 520 aaPredicted RBP6.65□□□□□ -1.34
CSDE1-216ENST00000534389 CREBZFQ9NS37 354 aa6.65□□□□□ -1.34
CSDE1-216ENST00000534389 CHADLQ6NUI6 762 aa6.64□□□□□ -1.35
CSDE1-216ENST00000534389 SPOCK2Q92563 424 aa6.64□□□□□ -1.35
CSDE1-216ENST00000534389 PRKAR2AP13861 404 aaKnown RBP6.63□□□□□ -1.35
CSDE1-216ENST00000534389 MNX1P50219 401 aaPredicted RBP6.58□□□□□ -1.36
CSDE1-216ENST00000534389 CIZ1Q9ULV3 898 aaPredicted RBP6.58□□□□□ -1.36
CSDE1-216ENST00000534389 FARP1Q9Y4F1 1045 aaPredicted RBP6.57□□□□□ -1.36
CSDE1-216ENST00000534389 ECM2O94769 699 aaPredicted RBP6.53□□□□□ -1.36
CSDE1-216ENST00000534389 NPM1P06748 294 aaKnown RBP eCLIP6.53□□□□□ -1.36
CSDE1-216ENST00000534389 DCAF8Q5TAQ9 597 aa6.51□□□□□ -1.37
CSDE1-216ENST00000534389 NUBP1P53384 320 aa6.5□□□□□ -1.37
CSDE1-216ENST00000534389 SP7Q8TDD2 431 aaPredicted RBP6.5□□□□□ -1.37
CSDE1-216ENST00000534389 GSE1Q14687 1217 aa6.49□□□□□ -1.37
CSDE1-216ENST00000534389 FAM212AQ96EL1 285 aa6.49□□□□□ -1.37
CSDE1-216ENST00000534389 RASEFQ8IZ41 740 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms