Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.18■□□□□ 0.02
VIMP08670 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.18■□□□□ 0.02
VIMP08670 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.18■□□□□ 0.02
VIMP08670 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.18■□□□□ 0.02
VIMP08670 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
VIMP08670 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
VIMP08670 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 PCDHA5-203ENST00000614258 4248 ntBASIC15.18■□□□□ 0.02
VIMP08670 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC15.18■□□□□ 0.02
VIMP08670 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
VIMP08670 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.18■□□□□ 0.02
VIMP08670 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC15.18■□□□□ 0.02
VIMP08670 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC15.17■□□□□ 0.02
VIMP08670 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VIMP08670 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 AC015909.5-201ENST00000624336 2266 ntBASIC15.17■□□□□ 0.02
VIMP08670 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.17■□□□□ 0.02
VIMP08670 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.17■□□□□ 0.02
VIMP08670 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.17■□□□□ 0.02
VIMP08670 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.17■□□□□ 0.02
VIMP08670 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.17■□□□□ 0.02
VIMP08670 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VIMP08670 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC15.17■□□□□ 0.02
VIMP08670 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
VIMP08670 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC15.17■□□□□ 0.02
VIMP08670 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VIMP08670 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.17■□□□□ 0.02
VIMP08670 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VIMP08670 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VIMP08670 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
VIMP08670 AC090505.1-201ENST00000430515 1834 ntBASIC15.16■□□□□ 0.02
VIMP08670 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 AC004870.1-201ENST00000315132 882 ntBASIC15.16■□□□□ 0.02
VIMP08670 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.16■□□□□ 0.02
VIMP08670 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
VIMP08670 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.16■□□□□ 0.02
VIMP08670 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.16■□□□□ 0.02
VIMP08670 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.16■□□□□ 0.02
VIMP08670 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms