Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 E2F3P2-201ENST00000447755 1422 ntBASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 TBC1D3J-201ENST00000620719 1426 ntBASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 AC114501.1-201ENST00000445949 172 ntBASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 AL031713.1-201ENST00000564813 661 ntBASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 AC008805.1-201ENST00000590892 364 ntBASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 AC009884.2-201ENST00000603110 324 ntBASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 AL805961.1-201ENST00000642026 753 ntBASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 REXO1L5P-201ENST00000622260 2098 ntBASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 AL008718.2-201ENST00000609206 1313 ntBASIC14.41□□□□□ -0.1
PCDHGA1Q9Y5H4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 AC073150.1-201ENST00000450406 1084 ntBASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms