Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 AP001267.2-201ENST00000532619 2086 ntBASIC12.21□□□□□ -0.45
FOXA2Q9Y261 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 AC139749.1-202ENST00000617529 3139 ntBASIC12.21□□□□□ -0.46
FOXA2Q9Y261 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 CLK3P2-201ENST00000427566 1453 ntBASIC12.21□□□□□ -0.46
FOXA2Q9Y261 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC12.21□□□□□ -0.46
FOXA2Q9Y261 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 AC055811.4-201ENST00000624039 1754 ntBASIC12.2□□□□□ -0.46
FOXA2Q9Y261 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 AC097359.2-201ENST00000604992 2389 ntBASIC12.2□□□□□ -0.46
FOXA2Q9Y261 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 GAPDHP40-201ENST00000505218 1006 ntBASIC12.2□□□□□ -0.46
FOXA2Q9Y261 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 AC123567.1-201ENST00000548294 1261 ntBASIC12.2□□□□□ -0.46
FOXA2Q9Y261 AC027307.3-201ENST00000594262 1100 ntBASIC12.2□□□□□ -0.46
FOXA2Q9Y261 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC12.2□□□□□ -0.46
FOXA2Q9Y261 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA2Q9Y261 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC12.19□□□□□ -0.46
FOXA2Q9Y261 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms