Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 AL138799.1-201ENST00000448213 1675 ntBASIC15.55■□□□□ 0.08
PCDH9Q9HC56 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 C1QBPP1-201ENST00000400117 770 ntBASIC15.55■□□□□ 0.08
PCDH9Q9HC56 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.55■□□□□ 0.08
PCDH9Q9HC56 AC022447.6-201ENST00000515522 438 ntBASIC15.55■□□□□ 0.08
PCDH9Q9HC56 AC124283.3-201ENST00000570869 594 ntBASIC15.55■□□□□ 0.08
PCDH9Q9HC56 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 AC041040.2-201ENST00000622926 2899 ntBASIC15.54■□□□□ 0.08
PCDH9Q9HC56 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 AC097376.2-205ENST00000610159 5334 ntBASIC15.54■□□□□ 0.08
PCDH9Q9HC56 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 SOCS2P1-201ENST00000417727 557 ntBASIC15.54■□□□□ 0.08
PCDH9Q9HC56 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 WFDC1-204ENST00000613603 549 ntBASIC15.54■□□□□ 0.08
PCDH9Q9HC56 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDH9Q9HC56 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH9Q9HC56 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.53■□□□□ 0.08
PCDH9Q9HC56 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH9Q9HC56 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms