Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 AL035456.1-201ENST00000456064 1369 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 AC136759.1-202ENST00000530858 2194 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 CETN4P-206ENST00000642099 2168 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 Z97205.2-201ENST00000564697 1639 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 RPL13P2-201ENST00000440687 659 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 CNN2P2-201ENST00000443536 909 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 CNN2P3-201ENST00000450201 906 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 SPDYE12P-201ENST00000618416 771 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 AL136317.3-201ENST00000618497 906 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 MIR6069-201ENST00000620069 79 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 AL109936.8-201ENST00000641772 604 ntBASIC13.21□□□□□ -0.29
NKX3-1Q99801 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
NKX3-1Q99801 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX3-1Q99801 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX3-1Q99801 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
NKX3-1Q99801 AC012508.2-201ENST00000567613 1472 ntBASIC13.21□□□□□ -0.3
NKX3-1Q99801 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
NKX3-1Q99801 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX3-1Q99801 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX3-1Q99801 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
NKX3-1Q99801 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 MIR770-201ENST00000390219 98 ntBASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms