Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 AC063926.3-201ENST00000624734 5658 ntBASIC16.65■□□□□ 0.26
HPS3Q969F9 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.65■□□□□ 0.26
HPS3Q969F9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HPS3Q969F9 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.65■□□□□ 0.26
HPS3Q969F9 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 BX640514.1-201ENST00000583223 1918 ntBASIC16.65■□□□□ 0.26
HPS3Q969F9 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.65■□□□□ 0.26
HPS3Q969F9 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.65■□□□□ 0.26
HPS3Q969F9 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.65■□□□□ 0.26
HPS3Q969F9 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.65■□□□□ 0.26
HPS3Q969F9 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.65■□□□□ 0.26
HPS3Q969F9 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.65■□□□□ 0.26
HPS3Q969F9 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.65■□□□□ 0.26
HPS3Q969F9 AP001889.1-201ENST00000525414 633 ntBASIC16.65■□□□□ 0.26
HPS3Q969F9 AC068587.3-201ENST00000526613 355 ntBASIC16.65■□□□□ 0.26
HPS3Q969F9 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.65■□□□□ 0.26
HPS3Q969F9 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.65■□□□□ 0.26
HPS3Q969F9 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.65■□□□□ 0.26
HPS3Q969F9 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.65■□□□□ 0.26
HPS3Q969F9 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 AL354702.1-201ENST00000442006 1960 ntBASIC16.65■□□□□ 0.26
HPS3Q969F9 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.65■□□□□ 0.26
HPS3Q969F9 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HPS3Q969F9 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.65■□□□□ 0.26
HPS3Q969F9 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HPS3Q969F9 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 AC005089.1-201ENST00000619486 2241 ntBASIC16.65■□□□□ 0.26
HPS3Q969F9 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
HPS3Q969F9 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.65■□□□□ 0.26
HPS3Q969F9 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.65■□□□□ 0.26
HPS3Q969F9 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HPS3Q969F9 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HPS3Q969F9 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.64■□□□□ 0.26
HPS3Q969F9 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
HPS3Q969F9 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
HPS3Q969F9 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
HPS3Q969F9 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.64■□□□□ 0.25
HPS3Q969F9 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
HPS3Q969F9 AL035633.1-201ENST00000406139 838 ntBASIC16.64■□□□□ 0.25
HPS3Q969F9 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.64■□□□□ 0.25
HPS3Q969F9 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 GNRHR2-203ENST00000581100 1187 ntBASIC16.64■□□□□ 0.25
HPS3Q969F9 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HPS3Q969F9 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 AL138709.1-201ENST00000614840 1693 ntBASIC16.64■□□□□ 0.25
HPS3Q969F9 AC020910.5-201ENST00000623668 1865 ntBASIC16.64■□□□□ 0.25
HPS3Q969F9 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.64■□□□□ 0.25
HPS3Q969F9 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.64■□□□□ 0.25
HPS3Q969F9 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HPS3Q969F9 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HPS3Q969F9 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HPS3Q969F9 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HPS3Q969F9 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HPS3Q969F9 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HPS3Q969F9 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HPS3Q969F9 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HPS3Q969F9 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HPS3Q969F9 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms