Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 AC005229.1-201ENST00000392885 409 ntBASIC18.18■□□□□ 0.5
VPS53Q5VIR6 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 AC112492.5-201ENST00000421897 457 ntBASIC18.18■□□□□ 0.5
VPS53Q5VIR6 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 AC026434.2-201ENST00000506094 1078 ntBASIC18.18■□□□□ 0.5
VPS53Q5VIR6 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 AC055811.4-201ENST00000624039 1754 ntBASIC18.17■□□□□ 0.5
VPS53Q5VIR6 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 FTH1P14-201ENST00000482930 551 ntBASIC18.17■□□□□ 0.5
VPS53Q5VIR6 KRT18P25-201ENST00000508931 1278 ntBASIC18.17■□□□□ 0.5
VPS53Q5VIR6 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 AL009178.2-201ENST00000597278 2719 ntBASIC18.17■□□□□ 0.5
VPS53Q5VIR6 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 USP35-204ENST00000530267 2419 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS53Q5VIR6 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 AC023090.2-201ENST00000625182 2110 ntBASIC18.16■□□□□ 0.5
VPS53Q5VIR6 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 PIGL-212ENST00000581006 554 ntTSL 4 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms