Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL28A1Q2UY09 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.52□□□□□ -0.09
COL28A1Q2UY09 CD8B2-202ENST00000417670 633 ntBASIC14.52□□□□□ -0.09
COL28A1Q2UY09 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 AC079178.1-201ENST00000420915 656 ntBASIC14.52□□□□□ -0.09
COL28A1Q2UY09 NOC2LP1-201ENST00000450578 752 ntBASIC14.52□□□□□ -0.09
COL28A1Q2UY09 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 AC093813.1-201ENST00000605066 256 ntBASIC14.52□□□□□ -0.09
COL28A1Q2UY09 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC14.52□□□□□ -0.09
COL28A1Q2UY09 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.52□□□□□ -0.09
COL28A1Q2UY09 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 AC104581.4-201ENST00000623126 3052 ntBASIC14.51□□□□□ -0.09
COL28A1Q2UY09 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 AC026410.3-201ENST00000514280 936 ntBASIC14.51□□□□□ -0.09
COL28A1Q2UY09 AC022217.1-201ENST00000521069 738 ntBASIC14.51□□□□□ -0.09
COL28A1Q2UY09 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 AC141586.1-203ENST00000567242 366 ntBASIC14.51□□□□□ -0.09
COL28A1Q2UY09 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 ECM1P1-201ENST00000604092 1279 ntBASIC14.51□□□□□ -0.09
COL28A1Q2UY09 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 AP005019.2-201ENST00000615104 511 ntBASIC14.51□□□□□ -0.09
COL28A1Q2UY09 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL28A1Q2UY09 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms