Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SSRP1Q08945 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
SSRP1Q08945 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 AC005229.1-201ENST00000392885 409 ntBASIC17.45■□□□□ 0.38
SSRP1Q08945 COX5BP8-201ENST00000416911 349 ntBASIC17.45■□□□□ 0.38
SSRP1Q08945 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.45■□□□□ 0.38
SSRP1Q08945 USP32P1-208ENST00000506594 1164 ntBASIC17.45■□□□□ 0.38
SSRP1Q08945 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.45■□□□□ 0.38
SSRP1Q08945 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.45■□□□□ 0.38
SSRP1Q08945 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.45■□□□□ 0.38
SSRP1Q08945 AC008735.3-201ENST00000596646 500 ntBASIC17.45■□□□□ 0.38
SSRP1Q08945 IGHV3-72-202ENST00000621503 303 ntBASIC17.45■□□□□ 0.38
SSRP1Q08945 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.45■□□□□ 0.38
SSRP1Q08945 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.45■□□□□ 0.38
SSRP1Q08945 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
SSRP1Q08945 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SSRP1Q08945 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SSRP1Q08945 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.45■□□□□ 0.38
SSRP1Q08945 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
SSRP1Q08945 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SSRP1Q08945 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.45■□□□□ 0.38
SSRP1Q08945 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
SSRP1Q08945 AL138709.1-201ENST00000614840 1693 ntBASIC17.45■□□□□ 0.38
SSRP1Q08945 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SSRP1Q08945 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SSRP1Q08945 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSRP1Q08945 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
SSRP1Q08945 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SSRP1Q08945 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.44■□□□□ 0.38
SSRP1Q08945 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
SSRP1Q08945 FAM45BP-202ENST00000592932 1624 ntBASIC17.44■□□□□ 0.38
SSRP1Q08945 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.44■□□□□ 0.38
SSRP1Q08945 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
SSRP1Q08945 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.44■□□□□ 0.38
SSRP1Q08945 TMEM14DP-201ENST00000422205 345 ntBASIC17.44■□□□□ 0.38
SSRP1Q08945 AC245100.3-201ENST00000441281 285 ntBASIC17.44■□□□□ 0.38
SSRP1Q08945 BCRP2-202ENST00000447763 634 ntBASIC17.44■□□□□ 0.38
SSRP1Q08945 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.44■□□□□ 0.38
SSRP1Q08945 BCRP6-201ENST00000510112 632 ntBASIC17.44■□□□□ 0.38
SSRP1Q08945 BCRP7-201ENST00000511549 544 ntBASIC17.44■□□□□ 0.38
SSRP1Q08945 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.44■□□□□ 0.38
SSRP1Q08945 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.44■□□□□ 0.38
SSRP1Q08945 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SSRP1Q08945 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.44■□□□□ 0.38
SSRP1Q08945 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.44■□□□□ 0.38
SSRP1Q08945 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.44■□□□□ 0.38
SSRP1Q08945 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SSRP1Q08945 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.44■□□□□ 0.38
SSRP1Q08945 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.44■□□□□ 0.38
SSRP1Q08945 AC068418.2-201ENST00000577309 3703 ntBASIC17.44■□□□□ 0.38
SSRP1Q08945 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC17.44■□□□□ 0.38
SSRP1Q08945 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSRP1Q08945 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SSRP1Q08945 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSRP1Q08945 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSRP1Q08945 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSRP1Q08945 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSRP1Q08945 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
SSRP1Q08945 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SSRP1Q08945 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SSRP1Q08945 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSRP1Q08945 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSRP1Q08945 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
SSRP1Q08945 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSRP1Q08945 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.43■□□□□ 0.38
SSRP1Q08945 AC007969.1-201ENST00000433675 447 ntBASIC17.43■□□□□ 0.38
SSRP1Q08945 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.43■□□□□ 0.38
SSRP1Q08945 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.43■□□□□ 0.38
SSRP1Q08945 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SSRP1Q08945 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms