Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.19□□□□□ -0.46
CX3CL1P78423 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.19□□□□□ -0.46
CX3CL1P78423 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC12.19□□□□□ -0.46
CX3CL1P78423 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC12.19□□□□□ -0.46
CX3CL1P78423 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
CX3CL1P78423 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.19□□□□□ -0.46
CX3CL1P78423 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.19□□□□□ -0.46
CX3CL1P78423 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC12.19□□□□□ -0.46
CX3CL1P78423 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC12.19□□□□□ -0.46
CX3CL1P78423 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC12.19□□□□□ -0.46
CX3CL1P78423 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC12.19□□□□□ -0.46
CX3CL1P78423 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 AC120045.2-201ENST00000567334 178 ntBASIC12.19□□□□□ -0.46
CX3CL1P78423 AC140912.1-201ENST00000577171 1054 ntBASIC12.19□□□□□ -0.46
CX3CL1P78423 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC12.19□□□□□ -0.46
CX3CL1P78423 TMEM261P1-201ENST00000604899 340 ntBASIC12.19□□□□□ -0.46
CX3CL1P78423 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC12.19□□□□□ -0.46
CX3CL1P78423 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.19□□□□□ -0.46
CX3CL1P78423 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC12.19□□□□□ -0.46
CX3CL1P78423 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.19□□□□□ -0.46
CX3CL1P78423 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.19□□□□□ -0.46
CX3CL1P78423 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.19□□□□□ -0.46
CX3CL1P78423 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.19□□□□□ -0.46
CX3CL1P78423 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.19□□□□□ -0.46
CX3CL1P78423 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CX3CL1P78423 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC12.19□□□□□ -0.46
CX3CL1P78423 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
CX3CL1P78423 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AC007787.1-201ENST00000588095 1583 ntBASIC12.18□□□□□ -0.46
CX3CL1P78423 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 BEND3P1-201ENST00000421591 1944 ntBASIC12.18□□□□□ -0.46
CX3CL1P78423 ZBED1P1-201ENST00000502364 1930 ntBASIC12.18□□□□□ -0.46
CX3CL1P78423 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 REXO1L4P-201ENST00000605109 1937 ntBASIC12.18□□□□□ -0.46
CX3CL1P78423 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CX3CL1P78423 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
CX3CL1P78423 C1QBPP1-201ENST00000400117 770 ntBASIC12.18□□□□□ -0.46
CX3CL1P78423 MPV17-208ENST00000405076 603 ntTSL 5 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC12.18□□□□□ -0.46
CX3CL1P78423 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.18□□□□□ -0.46
CX3CL1P78423 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.18□□□□□ -0.46
CX3CL1P78423 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC12.18□□□□□ -0.46
CX3CL1P78423 AP000845.1-201ENST00000581677 2131 ntBASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms