Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
UBA52P62987 BTBD7P1-201ENST00000447253 1453 ntBASIC13.11□□□□□ -0.31
UBA52P62987 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.11□□□□□ -0.31
UBA52P62987 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.11□□□□□ -0.31
UBA52P62987 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
UBA52P62987 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
UBA52P62987 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
UBA52P62987 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
UBA52P62987 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.11□□□□□ -0.31
UBA52P62987 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.11□□□□□ -0.31
UBA52P62987 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 AC087499.6-201ENST00000411576 835 ntBASIC13.11□□□□□ -0.31
UBA52P62987 AP006294.1-201ENST00000415407 339 ntBASIC13.11□□□□□ -0.31
UBA52P62987 AL080243.2-201ENST00000418783 582 ntBASIC13.11□□□□□ -0.31
UBA52P62987 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 RN7SL618P-201ENST00000477850 296 ntBASIC13.11□□□□□ -0.31
UBA52P62987 GIMAP3P-201ENST00000495150 836 ntBASIC13.11□□□□□ -0.31
UBA52P62987 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
UBA52P62987 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.11□□□□□ -0.31
UBA52P62987 BANF1P1-201ENST00000553684 263 ntBASIC13.11□□□□□ -0.31
UBA52P62987 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.11□□□□□ -0.31
UBA52P62987 AC104794.3-201ENST00000566840 1248 ntBASIC13.11□□□□□ -0.31
UBA52P62987 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.11□□□□□ -0.31
UBA52P62987 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
UBA52P62987 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.11□□□□□ -0.31
UBA52P62987 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 COL6A4P2-202ENST00000504443 2753 ntBASIC13.11□□□□□ -0.31
UBA52P62987 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.11□□□□□ -0.31
UBA52P62987 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.11□□□□□ -0.31
UBA52P62987 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
UBA52P62987 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
UBA52P62987 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.11□□□□□ -0.31
UBA52P62987 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.11□□□□□ -0.31
UBA52P62987 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.11□□□□□ -0.31
UBA52P62987 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBA52P62987 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.1□□□□□ -0.31
UBA52P62987 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.1□□□□□ -0.31
UBA52P62987 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.1□□□□□ -0.31
UBA52P62987 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 AL391825.1-201ENST00000457671 1364 ntBASIC13.1□□□□□ -0.31
UBA52P62987 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
UBA52P62987 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.1□□□□□ -0.31
UBA52P62987 GNAQP1-201ENST00000444815 1067 ntBASIC13.1□□□□□ -0.31
UBA52P62987 RN7SL752P-201ENST00000463779 287 ntBASIC13.1□□□□□ -0.31
UBA52P62987 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 ZNF890P-202ENST00000530367 1156 ntBASIC13.1□□□□□ -0.31
UBA52P62987 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
UBA52P62987 RPS15-212ENST00000593052 629 ntTSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 AL133215.2-201ENST00000609242 977 ntBASIC13.1□□□□□ -0.31
UBA52P62987 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.1□□□□□ -0.31
UBA52P62987 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
UBA52P62987 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.1□□□□□ -0.31
UBA52P62987 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.1□□□□□ -0.31
UBA52P62987 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBA52P62987 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms