Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AC092910.1-201ENST00000482027 1129 ntBASIC10.67□□□□□ -0.7
CKS1BP61024 PRYP6-201ENST00000514804 343 ntBASIC10.67□□□□□ -0.7
CKS1BP61024 EHF-205ENST00000527935 557 ntTSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 BMF-207ENST00000559701 630 ntTSL 3 BASIC10.67□□□□□ -0.7
CKS1BP61024 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC10.67□□□□□ -0.7
CKS1BP61024 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC10.67□□□□□ -0.7
CKS1BP61024 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC10.67□□□□□ -0.7
CKS1BP61024 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 OR7E47P-204ENST00000575924 449 ntBASIC10.67□□□□□ -0.7
CKS1BP61024 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CKS1BP61024 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
CKS1BP61024 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
CKS1BP61024 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CKS1BP61024 EBF1-201ENST00000313708 5250 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CKS1BP61024 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CKS1BP61024 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC10.67□□□□□ -0.7
CKS1BP61024 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
CKS1BP61024 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
CKS1BP61024 TKT-202ENST00000423516 2075 ntTSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC10.67□□□□□ -0.7
CKS1BP61024 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CKS1BP61024 AC099489.1-203ENST00000598234 10568 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
CKS1BP61024 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 LINC01544-201ENST00000567801 5168 ntTSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 HSPA12A-201ENST00000369209 5722 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
CKS1BP61024 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC10.67□□□□□ -0.7
CKS1BP61024 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 MYLK-204ENST00000360304 7738 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 LDLRAD4-201ENST00000359446 8486 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 AC105206.1-202ENST00000314927 2368 ntBASIC10.66□□□□□ -0.7
CKS1BP61024 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC10.66□□□□□ -0.7
CKS1BP61024 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 SPOCK3-203ENST00000421836 3061 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 ITGA2B-201ENST00000262407 3333 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC10.66□□□□□ -0.7
CKS1BP61024 KRT18P67-201ENST00000432816 1264 ntBASIC10.66□□□□□ -0.7
CKS1BP61024 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC10.66□□□□□ -0.7
CKS1BP61024 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 AC093909.1-201ENST00000504731 1122 ntBASIC10.66□□□□□ -0.7
CKS1BP61024 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC10.66□□□□□ -0.7
CKS1BP61024 SKP2-204ENST00000508514 821 ntTSL 3 BASIC10.66□□□□□ -0.7
CKS1BP61024 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 AC002347.1-201ENST00000569543 541 ntBASIC10.66□□□□□ -0.7
CKS1BP61024 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 CD7-202ENST00000578509 925 ntTSL 3 BASIC10.66□□□□□ -0.7
CKS1BP61024 AC024267.1-201ENST00000582320 895 ntBASIC10.66□□□□□ -0.7
CKS1BP61024 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 TP73-AS1-207ENST00000624167 988 ntBASIC10.66□□□□□ -0.7
CKS1BP61024 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
CKS1BP61024 AC112176.1-201ENST00000565428 3024 ntBASIC10.66□□□□□ -0.7
CKS1BP61024 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 C15orf40-201ENST00000304177 11244 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 CAPN13-201ENST00000295055 2683 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
CKS1BP61024 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 CELP-203ENST00000624767 2414 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 DGCR5-203ENST00000438934 5492 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms