Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
GFRA1P56159 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
GFRA1P56159 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
GFRA1P56159 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
GFRA1P56159 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.44□□□□□ -0.26
GFRA1P56159 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.43□□□□□ -0.26
GFRA1P56159 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.43□□□□□ -0.26
GFRA1P56159 AC126755.1-201ENST00000525846 6405 ntBASIC13.43□□□□□ -0.26
GFRA1P56159 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.43□□□□□ -0.26
GFRA1P56159 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
GFRA1P56159 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.43□□□□□ -0.26
GFRA1P56159 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
GFRA1P56159 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.43□□□□□ -0.26
GFRA1P56159 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.43□□□□□ -0.26
GFRA1P56159 GCOM2-201ENST00000509133 1104 ntBASIC13.43□□□□□ -0.26
GFRA1P56159 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 FAM8A2P-201ENST00000528813 1142 ntBASIC13.43□□□□□ -0.26
GFRA1P56159 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
GFRA1P56159 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.43□□□□□ -0.26
GFRA1P56159 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
GFRA1P56159 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.43□□□□□ -0.26
GFRA1P56159 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.43□□□□□ -0.26
GFRA1P56159 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
GFRA1P56159 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.43□□□□□ -0.26
GFRA1P56159 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
GFRA1P56159 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
GFRA1P56159 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
GFRA1P56159 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
GFRA1P56159 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.42□□□□□ -0.26
GFRA1P56159 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.42□□□□□ -0.26
GFRA1P56159 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.42□□□□□ -0.26
GFRA1P56159 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.42□□□□□ -0.26
GFRA1P56159 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
GFRA1P56159 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.42□□□□□ -0.26
GFRA1P56159 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.42□□□□□ -0.26
GFRA1P56159 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.42□□□□□ -0.26
GFRA1P56159 AC010141.1-201ENST00000411585 623 ntBASIC13.42□□□□□ -0.26
GFRA1P56159 AL354877.1-201ENST00000424412 413 ntBASIC13.42□□□□□ -0.26
GFRA1P56159 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.42□□□□□ -0.26
GFRA1P56159 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.42□□□□□ -0.26
GFRA1P56159 AC104982.3-201ENST00000581995 514 ntBASIC13.42□□□□□ -0.26
GFRA1P56159 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.42□□□□□ -0.26
GFRA1P56159 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.42□□□□□ -0.26
GFRA1P56159 AL136301.1-201ENST00000615830 422 ntBASIC13.42□□□□□ -0.26
GFRA1P56159 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.42□□□□□ -0.26
GFRA1P56159 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
GFRA1P56159 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.42□□□□□ -0.26
GFRA1P56159 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.42□□□□□ -0.26
GFRA1P56159 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
GFRA1P56159 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms