Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
LIM2P55344 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
LIM2P55344 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
LIM2P55344 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.28□□□□□ -0.12
LIM2P55344 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.28□□□□□ -0.12
LIM2P55344 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.28□□□□□ -0.12
LIM2P55344 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.28□□□□□ -0.12
LIM2P55344 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.28□□□□□ -0.12
LIM2P55344 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.28□□□□□ -0.12
LIM2P55344 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.28□□□□□ -0.12
LIM2P55344 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.28□□□□□ -0.12
LIM2P55344 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.28□□□□□ -0.12
LIM2P55344 AC063926.2-201ENST00000623766 1308 ntBASIC14.28□□□□□ -0.12
LIM2P55344 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
LIM2P55344 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
LIM2P55344 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIM2P55344 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.27□□□□□ -0.12
LIM2P55344 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIM2P55344 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.27□□□□□ -0.12
LIM2P55344 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIM2P55344 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.27□□□□□ -0.12
LIM2P55344 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LIM2P55344 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LIM2P55344 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
LIM2P55344 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIM2P55344 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIM2P55344 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
LIM2P55344 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIM2P55344 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LIM2P55344 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.27□□□□□ -0.13
LIM2P55344 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIM2P55344 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
LIM2P55344 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
LIM2P55344 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.27□□□□□ -0.13
LIM2P55344 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.27□□□□□ -0.13
LIM2P55344 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.27□□□□□ -0.13
LIM2P55344 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
LIM2P55344 FTH1P14-201ENST00000482930 551 ntBASIC14.27□□□□□ -0.13
LIM2P55344 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.27□□□□□ -0.13
LIM2P55344 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.27□□□□□ -0.13
LIM2P55344 AC025279.2-201ENST00000569730 653 ntBASIC14.27□□□□□ -0.13
LIM2P55344 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.27□□□□□ -0.13
LIM2P55344 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LIM2P55344 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.27□□□□□ -0.13
LIM2P55344 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms