Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GCOM2-201ENST00000509133 1104 ntBASIC15.6■□□□□ 0.09
PTPN9P43378 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.6■□□□□ 0.09
PTPN9P43378 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.6■□□□□ 0.09
PTPN9P43378 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN9P43378 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN9P43378 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 FKBP4P6-201ENST00000457486 1332 ntBASIC15.6■□□□□ 0.09
PTPN9P43378 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
PTPN9P43378 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN9P43378 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN9P43378 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
PTPN9P43378 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.59■□□□□ 0.09
PTPN9P43378 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN9P43378 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.59■□□□□ 0.09
PTPN9P43378 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
PTPN9P43378 AL590640.2-201ENST00000457038 527 ntBASIC15.59■□□□□ 0.09
PTPN9P43378 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.59■□□□□ 0.09
PTPN9P43378 TPT1P11-201ENST00000458482 498 ntBASIC15.59■□□□□ 0.09
PTPN9P43378 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.59■□□□□ 0.09
PTPN9P43378 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.59■□□□□ 0.09
PTPN9P43378 AC106820.3-201ENST00000561653 397 ntBASIC15.59■□□□□ 0.09
PTPN9P43378 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.59■□□□□ 0.09
PTPN9P43378 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
PTPN9P43378 AC006453.4-201ENST00000636949 1252 ntBASIC15.59■□□□□ 0.09
PTPN9P43378 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
PTPN9P43378 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN9P43378 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 INE2-201ENST00000630399 1874 ntBASIC15.59■□□□□ 0.09
PTPN9P43378 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
PTPN9P43378 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN9P43378 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.59■□□□□ 0.09
PTPN9P43378 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.58■□□□□ 0.09
PTPN9P43378 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
PTPN9P43378 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PTPN9P43378 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PTPN9P43378 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PTPN9P43378 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.58■□□□□ 0.09
PTPN9P43378 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.58■□□□□ 0.09
PTPN9P43378 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.58■□□□□ 0.09
PTPN9P43378 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
PTPN9P43378 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
PTPN9P43378 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.58■□□□□ 0.08
PTPN9P43378 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
PTPN9P43378 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.58■□□□□ 0.08
PTPN9P43378 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.58■□□□□ 0.08
PTPN9P43378 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 RN7SKP175-201ENST00000408472 289 ntBASIC15.58■□□□□ 0.08
PTPN9P43378 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN9P43378 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
PTPN9P43378 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.58■□□□□ 0.08
PTPN9P43378 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
PTPN9P43378 ALG3P1-201ENST00000508806 1114 ntBASIC15.58■□□□□ 0.08
PTPN9P43378 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.58■□□□□ 0.08
PTPN9P43378 AC078819.1-201ENST00000547454 765 ntBASIC15.58■□□□□ 0.08
PTPN9P43378 AC012085.1-201ENST00000548270 765 ntBASIC15.58■□□□□ 0.08
PTPN9P43378 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.58■□□□□ 0.08
PTPN9P43378 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms