Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC16.34■□□□□ 0.21
HTTP42858 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC16.34■□□□□ 0.21
HTTP42858 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
HTTP42858 AL136172.1-201ENST00000598590 1394 ntBASIC16.34■□□□□ 0.21
HTTP42858 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC16.34■□□□□ 0.21
HTTP42858 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HTTP42858 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.34■□□□□ 0.21
HTTP42858 AC023968.2-201ENST00000560593 1049 ntBASIC16.34■□□□□ 0.21
HTTP42858 AL160191.2-201ENST00000603975 601 ntBASIC16.34■□□□□ 0.21
HTTP42858 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.34■□□□□ 0.21
HTTP42858 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 AL137077.2-201ENST00000635124 1608 ntBASIC16.34■□□□□ 0.21
HTTP42858 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.34■□□□□ 0.21
HTTP42858 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HTTP42858 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
HTTP42858 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.21
HTTP42858 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HTTP42858 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.33■□□□□ 0.21
HTTP42858 AC012508.2-201ENST00000567613 1472 ntBASIC16.33■□□□□ 0.21
HTTP42858 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HTTP42858 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC16.33■□□□□ 0.21
HTTP42858 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC16.33■□□□□ 0.21
HTTP42858 HCG18-241ENST00000602290 821 ntTSL 2 BASIC16.33■□□□□ 0.21
HTTP42858 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
HTTP42858 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HTTP42858 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HTTP42858 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.33■□□□□ 0.2
HTTP42858 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HTTP42858 ZNF436-AS1-201ENST00000335648 2547 ntBASIC16.33■□□□□ 0.2
HTTP42858 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HTTP42858 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HTTP42858 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HTTP42858 AL391005.1-201ENST00000623953 2435 ntBASIC16.33■□□□□ 0.2
HTTP42858 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
HTTP42858 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.33■□□□□ 0.2
HTTP42858 NHP2P1-201ENST00000335274 462 ntBASIC16.33■□□□□ 0.2
HTTP42858 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC16.33■□□□□ 0.2
HTTP42858 MAGEA7P-201ENST00000436482 942 ntBASIC16.33■□□□□ 0.2
HTTP42858 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC16.33■□□□□ 0.2
HTTP42858 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC16.33■□□□□ 0.2
HTTP42858 PFN2-212ENST00000490975 858 ntTSL 4 BASIC16.33■□□□□ 0.2
HTTP42858 AC068831.5-201ENST00000557387 328 ntBASIC16.33■□□□□ 0.2
HTTP42858 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HTTP42858 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC16.33■□□□□ 0.2
HTTP42858 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
HTTP42858 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HTTP42858 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.33■□□□□ 0.2
HTTP42858 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
HTTP42858 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
HTTP42858 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HTTP42858 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HTTP42858 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.32■□□□□ 0.2
HTTP42858 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 CCL25-202ENST00000315626 450 ntTSL 2 BASIC16.32■□□□□ 0.2
HTTP42858 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC16.32■□□□□ 0.2
HTTP42858 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC16.32■□□□□ 0.2
HTTP42858 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC16.32■□□□□ 0.2
HTTP42858 FBXO36P1-201ENST00000579006 471 ntBASIC16.32■□□□□ 0.2
HTTP42858 RARS-210ENST00000626454 177 ntTSL 5 BASIC16.32■□□□□ 0.2
HTTP42858 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.32■□□□□ 0.2
HTTP42858 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.32■□□□□ 0.2
HTTP42858 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.32■□□□□ 0.2
HTTP42858 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
HTTP42858 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
HTTP42858 AC138761.6-201ENST00000583997 1423 ntBASIC16.32■□□□□ 0.2
HTTP42858 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HTTP42858 BAX-205ENST00000391871 687 ntTSL 5 BASIC16.32■□□□□ 0.2
HTTP42858 RN7SL147P-201ENST00000487345 298 ntBASIC16.32■□□□□ 0.2
HTTP42858 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC16.32■□□□□ 0.2
HTTP42858 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC16.32■□□□□ 0.2
HTTP42858 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC16.32■□□□□ 0.2
HTTP42858 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC16.32■□□□□ 0.2
HTTP42858 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC16.32■□□□□ 0.2
HTTP42858 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC16.32■□□□□ 0.2
HTTP42858 APOC1-209ENST00000592885 562 ntTSL 3 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms