Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CIITAP33076 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.86■□□□□ 0.29
CIITAP33076 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 TNRC18P2-201ENST00000417666 2714 ntBASIC16.86■□□□□ 0.29
CIITAP33076 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.86■□□□□ 0.29
CIITAP33076 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CIITAP33076 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.86■□□□□ 0.29
CIITAP33076 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CIITAP33076 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CIITAP33076 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.86■□□□□ 0.29
CIITAP33076 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
CIITAP33076 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.85■□□□□ 0.29
CIITAP33076 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.85■□□□□ 0.29
CIITAP33076 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 AC018529.2-202ENST00000611482 3087 ntBASIC16.85■□□□□ 0.29
CIITAP33076 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 BTBD6P1-201ENST00000412176 1267 ntBASIC16.85■□□□□ 0.29
CIITAP33076 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
CIITAP33076 MTX1P1-201ENST00000440904 838 ntBASIC16.85■□□□□ 0.29
CIITAP33076 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 AL591846.1-201ENST00000451736 433 ntBASIC16.85■□□□□ 0.29
CIITAP33076 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.85■□□□□ 0.29
CIITAP33076 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 MIR4783-201ENST00000580343 82 ntBASIC16.85■□□□□ 0.29
CIITAP33076 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.85■□□□□ 0.29
CIITAP33076 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.85■□□□□ 0.29
CIITAP33076 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CIITAP33076 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.85■□□□□ 0.29
CIITAP33076 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.85■□□□□ 0.29
CIITAP33076 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.85■□□□□ 0.29
CIITAP33076 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.85■□□□□ 0.29
CIITAP33076 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CIITAP33076 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.85■□□□□ 0.29
CIITAP33076 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.84■□□□□ 0.29
CIITAP33076 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.84■□□□□ 0.29
CIITAP33076 MIR663B-201ENST00000408361 115 ntBASIC16.84■□□□□ 0.29
CIITAP33076 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.84■□□□□ 0.29
CIITAP33076 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.84■□□□□ 0.29
CIITAP33076 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC16.84■□□□□ 0.29
CIITAP33076 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.84■□□□□ 0.29
CIITAP33076 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.84■□□□□ 0.29
CIITAP33076 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.84■□□□□ 0.29
CIITAP33076 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.84■□□□□ 0.29
CIITAP33076 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC16.84■□□□□ 0.29
CIITAP33076 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.84■□□□□ 0.29
CIITAP33076 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.84■□□□□ 0.29
CIITAP33076 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.84■□□□□ 0.29
CIITAP33076 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 MRPL37P1-201ENST00000592451 1337 ntBASIC16.84■□□□□ 0.29
CIITAP33076 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CIITAP33076 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CIITAP33076 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.84■□□□□ 0.29
CIITAP33076 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CIITAP33076 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms