Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 AC148477.4-201ENST00000613430 1793 ntBASIC13.42□□□□□ -0.26
HOXC12P31275 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC13.42□□□□□ -0.26
HOXC12P31275 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HOXC12P31275 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.42□□□□□ -0.26
HOXC12P31275 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXC12P31275 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.42□□□□□ -0.26
HOXC12P31275 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
HOXC12P31275 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.42□□□□□ -0.26
HOXC12P31275 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
HOXC12P31275 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXC12P31275 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.42□□□□□ -0.26
HOXC12P31275 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
HOXC12P31275 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HOXC12P31275 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
HOXC12P31275 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
HOXC12P31275 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXC12P31275 AC093433.1-201ENST00000458048 571 ntBASIC13.41□□□□□ -0.26
HOXC12P31275 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.41□□□□□ -0.26
HOXC12P31275 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.41□□□□□ -0.26
HOXC12P31275 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.41□□□□□ -0.26
HOXC12P31275 RNA5SP423-201ENST00000517127 109 ntBASIC13.41□□□□□ -0.26
HOXC12P31275 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.41□□□□□ -0.26
HOXC12P31275 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXC12P31275 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC13.41□□□□□ -0.26
HOXC12P31275 AC106872.11-201ENST00000605838 421 ntBASIC13.41□□□□□ -0.26
HOXC12P31275 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXC12P31275 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXC12P31275 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 AC132872.4-202ENST00000622924 2756 ntBASIC13.41□□□□□ -0.26
HOXC12P31275 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXC12P31275 AC007787.1-201ENST00000588095 1583 ntBASIC13.41□□□□□ -0.26
HOXC12P31275 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXC12P31275 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 TP73-203ENST00000357733 4899 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXC12P31275 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXC12P31275 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.4□□□□□ -0.26
HOXC12P31275 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.4□□□□□ -0.26
HOXC12P31275 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
HOXC12P31275 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC13.4□□□□□ -0.26
HOXC12P31275 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.4□□□□□ -0.26
HOXC12P31275 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXC12P31275 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXC12P31275 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXC12P31275 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
HOXC12P31275 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms