Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 LRRC59-203ENST00000576448 1531 ntBASIC12.82□□□□□ -0.36
USF1P22415 AC015818.8-201ENST00000587907 1519 ntBASIC12.82□□□□□ -0.36
USF1P22415 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
USF1P22415 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 CALR4P-201ENST00000431943 946 ntBASIC12.81□□□□□ -0.36
USF1P22415 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 ACR-203ENST00000529621 708 ntTSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 AC104982.3-201ENST00000581995 514 ntBASIC12.81□□□□□ -0.36
USF1P22415 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 INO80C-210ENST00000590757 595 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.81□□□□□ -0.36
USF1P22415 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 PPT1-215ENST00000641471 2368 ntBASIC12.81□□□□□ -0.36
USF1P22415 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC12.81□□□□□ -0.36
USF1P22415 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USF1P22415 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.81□□□□□ -0.36
USF1P22415 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.8□□□□□ -0.36
USF1P22415 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.8□□□□□ -0.36
USF1P22415 AC006058.4-201ENST00000624016 1670 ntBASIC12.8□□□□□ -0.36
USF1P22415 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.8□□□□□ -0.36
USF1P22415 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.8□□□□□ -0.36
USF1P22415 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
USF1P22415 RNU1-114P-201ENST00000365297 166 ntBASIC12.8□□□□□ -0.36
USF1P22415 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 SLC25A24P2-201ENST00000415059 510 ntBASIC12.8□□□□□ -0.36
USF1P22415 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms