Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.08□□□□□ -0.16
COL5A1P20908 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
COL5A1P20908 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
COL5A1P20908 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.07□□□□□ -0.16
COL5A1P20908 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.07□□□□□ -0.16
COL5A1P20908 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.07□□□□□ -0.16
COL5A1P20908 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.07□□□□□ -0.16
COL5A1P20908 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.07□□□□□ -0.16
COL5A1P20908 AC004837.1-201ENST00000446267 564 ntBASIC14.07□□□□□ -0.16
COL5A1P20908 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
COL5A1P20908 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC14.07□□□□□ -0.16
COL5A1P20908 NEU3-207ENST00000534628 746 ntTSL 2 BASIC14.07□□□□□ -0.16
COL5A1P20908 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC14.07□□□□□ -0.16
COL5A1P20908 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC14.07□□□□□ -0.16
COL5A1P20908 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC14.07□□□□□ -0.16
COL5A1P20908 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC14.07□□□□□ -0.16
COL5A1P20908 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.07□□□□□ -0.16
COL5A1P20908 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.07□□□□□ -0.16
COL5A1P20908 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.07□□□□□ -0.16
COL5A1P20908 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC14.07□□□□□ -0.16
COL5A1P20908 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
COL5A1P20908 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
COL5A1P20908 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.07□□□□□ -0.16
COL5A1P20908 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.07□□□□□ -0.16
COL5A1P20908 IL9RP3-201ENST00000442856 1674 ntBASIC14.07□□□□□ -0.16
COL5A1P20908 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC14.07□□□□□ -0.16
COL5A1P20908 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL5A1P20908 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC14.06□□□□□ -0.16
COL5A1P20908 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC14.06□□□□□ -0.16
COL5A1P20908 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC14.06□□□□□ -0.16
COL5A1P20908 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
COL5A1P20908 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL5A1P20908 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.06□□□□□ -0.16
COL5A1P20908 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC14.06□□□□□ -0.16
COL5A1P20908 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
COL5A1P20908 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.06□□□□□ -0.16
COL5A1P20908 HLA-DQB1-202ENST00000399079 1501 ntBASIC14.06□□□□□ -0.16
COL5A1P20908 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL5A1P20908 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.06□□□□□ -0.16
COL5A1P20908 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL5A1P20908 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 HTR7P1-202ENST00000624664 4411 ntBASIC14.06□□□□□ -0.16
COL5A1P20908 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms