Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.03■□□□□ -0
MSH3P20585 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
MSH3P20585 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 AC005229.1-201ENST00000392885 409 ntBASIC15.03■□□□□ -0
MSH3P20585 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
MSH3P20585 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.03■□□□□ -0
MSH3P20585 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.03■□□□□ -0
MSH3P20585 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.03■□□□□ -0
MSH3P20585 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.03■□□□□ -0
MSH3P20585 KRT43P-201ENST00000434019 910 ntBASIC15.03■□□□□ -0
MSH3P20585 BCRP2-202ENST00000447763 634 ntBASIC15.03■□□□□ -0
MSH3P20585 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 BCRP6-201ENST00000510112 632 ntBASIC15.03■□□□□ -0
MSH3P20585 BCRP7-201ENST00000511549 544 ntBASIC15.03■□□□□ -0
MSH3P20585 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.03■□□□□ -0
MSH3P20585 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
MSH3P20585 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.03■□□□□ -0
MSH3P20585 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.03■□□□□ -0
MSH3P20585 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
MSH3P20585 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
MSH3P20585 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.03■□□□□ -0
MSH3P20585 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
MSH3P20585 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.03■□□□□ -0
MSH3P20585 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.03■□□□□ -0
MSH3P20585 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.03■□□□□ -0
MSH3P20585 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.03■□□□□ -0
MSH3P20585 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSH3P20585 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.02■□□□□ -0
MSH3P20585 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.02■□□□□ -0
MSH3P20585 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 AC018665.1-201ENST00000622927 1362 ntBASIC15.02■□□□□ -0
MSH3P20585 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSH3P20585 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.02■□□□□ -0
MSH3P20585 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.02■□□□□ -0
MSH3P20585 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.02■□□□□ -0
MSH3P20585 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.02■□□□□ -0
MSH3P20585 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.02■□□□□ -0
MSH3P20585 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.02■□□□□ -0
MSH3P20585 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.02■□□□□ -0
MSH3P20585 AC106760.1-201ENST00000508690 800 ntBASIC15.02■□□□□ -0
MSH3P20585 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.02■□□□□ -0
MSH3P20585 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.02■□□□□ -0
MSH3P20585 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.02■□□□□ -0
MSH3P20585 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.02■□□□□ -0
MSH3P20585 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.02■□□□□ -0
MSH3P20585 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
MSH3P20585 AC145423.3-201ENST00000615987 467 ntBASIC15.02■□□□□ -0
MSH3P20585 AL603764.1-201ENST00000636452 321 ntBASIC15.02■□□□□ -0
MSH3P20585 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.02□□□□□ -0.01
MSH3P20585 AC055811.4-201ENST00000624039 1754 ntBASIC15.02□□□□□ -0.01
MSH3P20585 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSH3P20585 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.02□□□□□ -0.01
MSH3P20585 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSH3P20585 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.02□□□□□ -0.01
MSH3P20585 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSH3P20585 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSH3P20585 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
MSH3P20585 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.02□□□□□ -0.01
MSH3P20585 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
MSH3P20585 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.02□□□□□ -0.01
MSH3P20585 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
MSH3P20585 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.01□□□□□ -0.01
MSH3P20585 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
MSH3P20585 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
MSH3P20585 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
MSH3P20585 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.01□□□□□ -0.01
MSH3P20585 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.01□□□□□ -0.01
MSH3P20585 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSH3P20585 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms