Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A2P12110 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
COL6A2P12110 AL928921.2-201ENST00000641325 2442 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A2P12110 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
COL6A2P12110 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A2P12110 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL6A2P12110 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 AL139094.1-201ENST00000405549 1188 ntBASIC14.9□□□□□ -0.02
COL6A2P12110 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A2P12110 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
COL6A2P12110 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.9□□□□□ -0.02
COL6A2P12110 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A2P12110 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A2P12110 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.9□□□□□ -0.02
COL6A2P12110 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
COL6A2P12110 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.9□□□□□ -0.02
COL6A2P12110 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.9□□□□□ -0.02
COL6A2P12110 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.9□□□□□ -0.02
COL6A2P12110 BX539320.1-201ENST00000623759 877 ntBASIC14.9□□□□□ -0.02
COL6A2P12110 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 LINC01230-201ENST00000625222 3017 ntBASIC14.9□□□□□ -0.02
COL6A2P12110 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
COL6A2P12110 KRT8P14-201ENST00000414254 1442 ntBASIC14.9□□□□□ -0.02
COL6A2P12110 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A2P12110 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A2P12110 COL6A4P2-202ENST00000504443 2753 ntBASIC14.9□□□□□ -0.02
COL6A2P12110 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
COL6A2P12110 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.89□□□□□ -0.03
COL6A2P12110 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.89□□□□□ -0.03
COL6A2P12110 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.89□□□□□ -0.03
COL6A2P12110 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A2P12110 RRP7BP-205ENST00000566851 833 ntBASIC14.89□□□□□ -0.03
COL6A2P12110 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A2P12110 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A2P12110 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.89□□□□□ -0.03
COL6A2P12110 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms