Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC016694.1-201ENST00000434179 700 ntBASIC14.18□□□□□ -0.14
LDB3O75112 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.18□□□□□ -0.14
LDB3O75112 AL590640.2-201ENST00000457038 527 ntBASIC14.18□□□□□ -0.14
LDB3O75112 AC007551.1-201ENST00000457394 519 ntBASIC14.18□□□□□ -0.14
LDB3O75112 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.18□□□□□ -0.14
LDB3O75112 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.18□□□□□ -0.14
LDB3O75112 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.17□□□□□ -0.14
LDB3O75112 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.17□□□□□ -0.14
LDB3O75112 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
LDB3O75112 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.17□□□□□ -0.14
LDB3O75112 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
LDB3O75112 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.17□□□□□ -0.14
LDB3O75112 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
LDB3O75112 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.17□□□□□ -0.14
LDB3O75112 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
LDB3O75112 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
LDB3O75112 RAB43P1-201ENST00000561790 589 ntBASIC14.17□□□□□ -0.14
LDB3O75112 ECM1P1-201ENST00000604092 1279 ntBASIC14.17□□□□□ -0.14
LDB3O75112 AL162274.1-201ENST00000617191 1098 ntBASIC14.17□□□□□ -0.14
LDB3O75112 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 ENPP7P14-201ENST00000621765 1040 ntBASIC14.17□□□□□ -0.14
LDB3O75112 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.17□□□□□ -0.14
LDB3O75112 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LDB3O75112 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LDB3O75112 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
LDB3O75112 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
LDB3O75112 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
LDB3O75112 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LDB3O75112 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
LDB3O75112 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.16□□□□□ -0.14
LDB3O75112 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.16□□□□□ -0.14
LDB3O75112 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
LDB3O75112 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.16□□□□□ -0.14
LDB3O75112 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LDB3O75112 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.16□□□□□ -0.14
LDB3O75112 FAM197Y7-201ENST00000432892 766 ntBASIC14.16□□□□□ -0.14
LDB3O75112 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
LDB3O75112 AC245100.3-201ENST00000441281 285 ntBASIC14.16□□□□□ -0.14
LDB3O75112 AC234783.1-201ENST00000441761 496 ntBASIC14.16□□□□□ -0.14
LDB3O75112 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms