Protein–RNA interactions for Protein: O43731

KDELR3, ER lumen protein-retaining receptor 3, humanhuman

Predictions only

Length 214 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDELR3O43731 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.2■□□□□ 0.02
KDELR3O43731 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.2■□□□□ 0.02
KDELR3O43731 ALG3P1-201ENST00000508806 1114 ntBASIC15.2■□□□□ 0.02
KDELR3O43731 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.2■□□□□ 0.02
KDELR3O43731 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.2■□□□□ 0.02
KDELR3O43731 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.2■□□□□ 0.02
KDELR3O43731 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.2■□□□□ 0.02
KDELR3O43731 MIR4741-201ENST00000579822 90 ntBASIC15.2■□□□□ 0.02
KDELR3O43731 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.2■□□□□ 0.02
KDELR3O43731 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.2■□□□□ 0.02
KDELR3O43731 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.2■□□□□ 0.02
KDELR3O43731 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.2■□□□□ 0.02
KDELR3O43731 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
KDELR3O43731 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.2■□□□□ 0.02
KDELR3O43731 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.2■□□□□ 0.02
KDELR3O43731 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 CICP14-201ENST00000629111 2732 ntBASIC15.2■□□□□ 0.02
KDELR3O43731 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
KDELR3O43731 AC007292.2-201ENST00000593524 1812 ntBASIC15.2■□□□□ 0.02
KDELR3O43731 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
KDELR3O43731 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.19■□□□□ 0.02
KDELR3O43731 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
KDELR3O43731 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.19■□□□□ 0.02
KDELR3O43731 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 AC009542.2-202ENST00000619004 1067 ntBASIC15.19■□□□□ 0.02
KDELR3O43731 AL023775.1-201ENST00000454907 1746 ntBASIC15.19■□□□□ 0.02
KDELR3O43731 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 FLJ16779-201ENST00000612722 7638 ntBASIC15.19■□□□□ 0.02
KDELR3O43731 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.19■□□□□ 0.02
KDELR3O43731 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
KDELR3O43731 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.19■□□□□ 0.02
KDELR3O43731 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.18■□□□□ 0.02
KDELR3O43731 TUBB1P2-201ENST00000422712 1306 ntBASIC15.18■□□□□ 0.02
KDELR3O43731 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.18■□□□□ 0.02
KDELR3O43731 TUBB1P1-201ENST00000503144 1300 ntBASIC15.18■□□□□ 0.02
KDELR3O43731 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
KDELR3O43731 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
KDELR3O43731 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.18■□□□□ 0.02
KDELR3O43731 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
KDELR3O43731 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.18■□□□□ 0.02
KDELR3O43731 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
KDELR3O43731 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms