Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.28□□□□□ -0.12
ATG4BQ9Y4P1 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 AL161772.1-201ENST00000610494 4412 ntBASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.12
ATG4BQ9Y4P1 LINC00552-201ENST00000625151 2579 ntBASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 TMEM14DP-201ENST00000422205 345 ntBASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 TTTY23B-201ENST00000442790 549 ntBASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AC106760.1-201ENST00000508690 800 ntBASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 SLC25A47P1-201ENST00000531577 414 ntBASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AC008735.3-201ENST00000596646 500 ntBASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AC004466.1-201ENST00000599515 1080 ntBASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ATG4BQ9Y4P1 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 AC018665.1-201ENST00000622927 1362 ntBASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 USP32P1-208ENST00000506594 1164 ntBASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms