Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.31
CHMP1AQ9HD42 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
CHMP1AQ9HD42 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.08□□□□□ -0.31
CHMP1AQ9HD42 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
CHMP1AQ9HD42 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.08□□□□□ -0.31
CHMP1AQ9HD42 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CHMP1AQ9HD42 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 AC005829.1-201ENST00000570002 483 ntBASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 AC105339.1-204ENST00000636249 355 ntBASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 NRXN1-210ENST00000406316 9375 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 DIAPH2-201ENST00000324765 9333 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHMP1AQ9HD42 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms