Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 POU5F1P6-201ENST00000466990 990 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 KRT8P44-201ENST00000441609 1350 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 NLRP2-202ENST00000339757 3422 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 DCAF6-203ENST00000367843 3302 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CSH2-202ENST00000345366 598 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CSH2-206ENST00000560142 749 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 GLUL-204ENST00000417584 4065 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 TMEM134-201ENST00000308022 3534 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 LOX-206ENST00000639739 1626 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CACNB1-212ENST00000622445 3722 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC104596.2-201ENST00000512793 793 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC105129.2-201ENST00000559536 390 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 KRT8P19-201ENST00000551916 1455 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FO393414.2-201ENST00000405153 598 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms