Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC54Q8NEL0 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 AC241585.1-201ENST00000433527 519 ntBASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 TPT1P11-201ENST00000458482 498 ntBASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 AC007191.1-201ENST00000623179 2995 ntBASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CCDC54Q8NEL0 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 AC100757.3-201ENST00000622361 1406 ntBASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 AC092053.3-201ENST00000641308 4975 ntBASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 LINC00552-201ENST00000625151 2579 ntBASIC13.21□□□□□ -0.3
CCDC54Q8NEL0 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 AC093525.8-201ENST00000624099 1342 ntBASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC13.2□□□□□ -0.3
CCDC54Q8NEL0 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms