Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 TSACC-208ENST00000481479 741 ntTSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 MIR4683-201ENST00000579659 81 ntBASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 AC091544.8-201ENST00000619490 361 ntBASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 AC023024.2-201ENST00000623561 1993 ntBASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 AC112693.3-201ENST00000624819 1983 ntBASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 TSPY26P-202ENST00000565928 3884 ntBASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 AP000593.2-201ENST00000542775 1433 ntBASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
HDDC3Q8N4P3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
HDDC3Q8N4P3 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
HDDC3Q8N4P3 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
HDDC3Q8N4P3 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 FTLP1-201ENST00000449155 526 ntBASIC15.08■□□□□ 0
HDDC3Q8N4P3 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 CHMP4BP1-201ENST00000556017 588 ntBASIC15.08■□□□□ 0
HDDC3Q8N4P3 SPCS2P2-201ENST00000603270 608 ntBASIC15.08■□□□□ 0
HDDC3Q8N4P3 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 TMBIM7P-203ENST00000641617 1718 ntBASIC15.08■□□□□ 0
HDDC3Q8N4P3 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.08■□□□□ 0
HDDC3Q8N4P3 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
HDDC3Q8N4P3 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 AP000845.1-201ENST00000581677 2131 ntBASIC15.07■□□□□ 0
HDDC3Q8N4P3 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 SSR4P1-203ENST00000599569 2260 ntBASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms