Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RP1-207ENST00000637698 6177 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 KLC4-201ENST00000259708 2688 ntAPPRIS P4 TSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CARD14-209ENST00000573882 4537 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 AC012617.1-204ENST00000586340 2305 ntBASIC9.32□□□□□ -0.92
LINC00643Q86TS7 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CHL1-201ENST00000256509 8023 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 SPTB-203ENST00000389721 6705 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 TMEM246-202ENST00000374848 4244 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 GDPD5-204ENST00000526177 4150 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 VWA8-203ENST00000379310 7147 ntAPPRIS P1 TSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 TPX2-202ENST00000340513 3605 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 DNAH2-202ENST00000570791 2994 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 BCDIN3D-AS1-201ENST00000548872 3078 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 DR1-202ENST00000370272 10148 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 HDAC8-207ENST00000373573 2014 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 UBP1-204ENST00000447368 3669 ntAPPRIS ALT1 TSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 LSINCT5-201ENST00000626215 2647 ntBASIC9.31□□□□□ -0.92
LINC00643Q86TS7 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 OSTM1-AS1-202ENST00000441184 3334 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 SPTY2D1-201ENST00000336349 5754 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 ZNF629-201ENST00000262525 6087 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 AC096631.2-201ENST00000436136 790 ntBASIC9.31□□□□□ -0.92
LINC00643Q86TS7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 USF2-205ENST00000594064 1179 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 AC010503.4-201ENST00000615487 688 ntBASIC9.31□□□□□ -0.92
LINC00643Q86TS7 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 ZNF41-202ENST00000377065 4531 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 AC007787.1-201ENST00000588095 1583 ntBASIC9.31□□□□□ -0.92
LINC00643Q86TS7 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 DNMT1-202ENST00000359526 5206 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 STK25-235ENST00000543554 2556 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 PPFIA4-210ENST00000599966 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 ELN-216ENST00000429192 3298 ntAPPRIS ALT2 TSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 ESR2-213ENST00000557772 5458 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 MATR3-227ENST00000618441 4018 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 SZRD1-201ENST00000401088 3636 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 TMPRSS7-201ENST00000419127 2317 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 REXO1L4P-201ENST00000605109 1937 ntBASIC9.31□□□□□ -0.92
LINC00643Q86TS7 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
LINC00643Q86TS7 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
LINC00643Q86TS7 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms