Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
PCDH1Q08174 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.55□□□□□ -0.08
PCDH1Q08174 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 AC113367.3-201ENST00000508316 1912 ntBASIC14.55□□□□□ -0.08
PCDH1Q08174 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
PCDH1Q08174 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PCDH1Q08174 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.55□□□□□ -0.08
PCDH1Q08174 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.55□□□□□ -0.08
PCDH1Q08174 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 AC026434.2-201ENST00000506094 1078 ntBASIC14.55□□□□□ -0.08
PCDH1Q08174 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.55□□□□□ -0.08
PCDH1Q08174 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 AC190387.1-201ENST00000551683 408 ntBASIC14.55□□□□□ -0.08
PCDH1Q08174 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.55□□□□□ -0.08
PCDH1Q08174 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.55□□□□□ -0.08
PCDH1Q08174 AC008494.3-201ENST00000606615 944 ntBASIC14.55□□□□□ -0.08
PCDH1Q08174 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.55□□□□□ -0.08
PCDH1Q08174 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.55□□□□□ -0.08
PCDH1Q08174 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.55□□□□□ -0.08
PCDH1Q08174 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PCDH1Q08174 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.55□□□□□ -0.08
PCDH1Q08174 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.55□□□□□ -0.08
PCDH1Q08174 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 AC007191.1-201ENST00000623179 2995 ntBASIC14.55□□□□□ -0.08
PCDH1Q08174 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PCDH1Q08174 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDH1Q08174 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 MTHFR-210ENST00000641407 2387 ntBASIC14.54□□□□□ -0.08
PCDH1Q08174 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
PCDH1Q08174 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 ACTG1P3-201ENST00000431775 1114 ntBASIC14.54□□□□□ -0.08
PCDH1Q08174 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PCDH1Q08174 AC093433.1-201ENST00000458048 571 ntBASIC14.54□□□□□ -0.08
PCDH1Q08174 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
PCDH1Q08174 TERF1P3-201ENST00000505638 1227 ntBASIC14.54□□□□□ -0.08
PCDH1Q08174 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
PCDH1Q08174 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDH1Q08174 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
PCDH1Q08174 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
PCDH1Q08174 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PCDH1Q08174 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.54□□□□□ -0.08
PCDH1Q08174 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDH1Q08174 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.54□□□□□ -0.08
PCDH1Q08174 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
PCDH1Q08174 SNX18-202ENST00000343017 3140 ntBASIC14.54□□□□□ -0.08
PCDH1Q08174 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDH1Q08174 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDH1Q08174 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.53□□□□□ -0.08
PCDH1Q08174 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
PCDH1Q08174 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDH1Q08174 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDH1Q08174 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms