Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC15.69■□□□□ 0.1
COL4A4P53420 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.69■□□□□ 0.1
COL4A4P53420 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC15.69■□□□□ 0.1
COL4A4P53420 LINC01783-202ENST00000614408 828 ntBASIC15.69■□□□□ 0.1
COL4A4P53420 BX284668.2-205ENST00000619677 828 ntBASIC15.69■□□□□ 0.1
COL4A4P53420 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.69■□□□□ 0.1
COL4A4P53420 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.69■□□□□ 0.1
COL4A4P53420 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
COL4A4P53420 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.68■□□□□ 0.1
COL4A4P53420 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC15.68■□□□□ 0.1
COL4A4P53420 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.68■□□□□ 0.1
COL4A4P53420 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.68■□□□□ 0.1
COL4A4P53420 AL590440.2-201ENST00000641973 1595 ntBASIC15.68■□□□□ 0.1
COL4A4P53420 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC15.68■□□□□ 0.1
COL4A4P53420 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL4A4P53420 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.68■□□□□ 0.1
COL4A4P53420 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL4A4P53420 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC15.68■□□□□ 0.1
COL4A4P53420 AL512306.1-201ENST00000432698 848 ntBASIC15.68■□□□□ 0.1
COL4A4P53420 XBP1P1-201ENST00000436573 652 ntBASIC15.68■□□□□ 0.1
COL4A4P53420 CICP12-201ENST00000455801 843 ntBASIC15.68■□□□□ 0.1
COL4A4P53420 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC15.68■□□□□ 0.1
COL4A4P53420 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
COL4A4P53420 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC15.68■□□□□ 0.1
COL4A4P53420 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC15.68■□□□□ 0.1
COL4A4P53420 AC006158.1-201ENST00000610661 249 ntBASIC15.68■□□□□ 0.1
COL4A4P53420 AC073592.2-201ENST00000623062 780 ntBASIC15.68■□□□□ 0.1
COL4A4P53420 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC15.68■□□□□ 0.1
COL4A4P53420 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
COL4A4P53420 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 AC144522.1-201ENST00000625111 1658 ntBASIC15.68■□□□□ 0.1
COL4A4P53420 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC15.68■□□□□ 0.1
COL4A4P53420 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL4A4P53420 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.67■□□□□ 0.1
COL4A4P53420 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.67■□□□□ 0.1
COL4A4P53420 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.67■□□□□ 0.1
COL4A4P53420 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.67■□□□□ 0.1
COL4A4P53420 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC15.67■□□□□ 0.1
COL4A4P53420 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC15.67■□□□□ 0.1
COL4A4P53420 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC15.67■□□□□ 0.1
COL4A4P53420 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.67■□□□□ 0.1
COL4A4P53420 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.67■□□□□ 0.1
COL4A4P53420 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC15.67■□□□□ 0.1
COL4A4P53420 AC131206.1-201ENST00000538078 1211 ntBASIC15.67■□□□□ 0.1
COL4A4P53420 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.67■□□□□ 0.1
COL4A4P53420 MIR4472-1-201ENST00000584349 80 ntBASIC15.67■□□□□ 0.1
COL4A4P53420 AC007326.1-201ENST00000604539 458 ntBASIC15.67■□□□□ 0.1
COL4A4P53420 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.67■□□□□ 0.1
COL4A4P53420 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.67■□□□□ 0.1
COL4A4P53420 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.67■□□□□ 0.1
COL4A4P53420 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.67■□□□□ 0.1
COL4A4P53420 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.67■□□□□ 0.1
COL4A4P53420 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms