Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
CTCFP49711 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 AL513523.2-202ENST00000427283 2040 ntBASIC17.32■□□□□ 0.36
CTCFP49711 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CTCFP49711 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC17.32■□□□□ 0.36
CTCFP49711 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC17.32■□□□□ 0.36
CTCFP49711 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CTCFP49711 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC17.32■□□□□ 0.36
CTCFP49711 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 AC007326.1-201ENST00000604539 458 ntBASIC17.32■□□□□ 0.36
CTCFP49711 AC012073.1-201ENST00000606114 1108 ntBASIC17.32■□□□□ 0.36
CTCFP49711 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 GGT3P-204ENST00000453783 1664 ntBASIC17.32■□□□□ 0.36
CTCFP49711 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.32■□□□□ 0.36
CTCFP49711 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CTCFP49711 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTCFP49711 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.32■□□□□ 0.36
CTCFP49711 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
CTCFP49711 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.31■□□□□ 0.36
CTCFP49711 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 LINC01815-202ENST00000641468 1409 ntBASIC17.31■□□□□ 0.36
CTCFP49711 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC17.31■□□□□ 0.36
CTCFP49711 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 AL008718.2-201ENST00000609206 1313 ntBASIC17.31■□□□□ 0.36
CTCFP49711 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.31■□□□□ 0.36
CTCFP49711 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC17.31■□□□□ 0.36
CTCFP49711 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC17.31■□□□□ 0.36
CTCFP49711 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CTCFP49711 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC17.31■□□□□ 0.36
CTCFP49711 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 MIR6125-201ENST00000618986 96 ntBASIC17.31■□□□□ 0.36
CTCFP49711 AC002472.3-201ENST00000640124 621 ntBASIC17.31■□□□□ 0.36
CTCFP49711 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.31■□□□□ 0.36
CTCFP49711 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
CTCFP49711 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CTCFP49711 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.31■□□□□ 0.36
CTCFP49711 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.31■□□□□ 0.36
CTCFP49711 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTCFP49711 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.3■□□□□ 0.36
CTCFP49711 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.3■□□□□ 0.36
CTCFP49711 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 FKBP4P6-201ENST00000457486 1332 ntBASIC17.3■□□□□ 0.36
CTCFP49711 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CTCFP49711 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 MIR566-201ENST00000385187 94 ntBASIC17.3■□□□□ 0.36
CTCFP49711 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 OR51A9P-201ENST00000422578 911 ntBASIC17.3■□□□□ 0.36
CTCFP49711 RN7SL494P-201ENST00000461517 304 ntBASIC17.3■□□□□ 0.36
CTCFP49711 AC004066.1-201ENST00000502488 802 ntBASIC17.3■□□□□ 0.36
CTCFP49711 CHCHD2P2-201ENST00000503744 321 ntBASIC17.3■□□□□ 0.36
CTCFP49711 PGAM1P12-201ENST00000505622 748 ntBASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms