Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 DMBT1P1-203ENST00000636837 4628 ntBASIC14.24□□□□□ -0.13
RFX3P48380 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 REXO1L4P-201ENST00000605109 1937 ntBASIC14.24□□□□□ -0.13
RFX3P48380 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.24□□□□□ -0.13
RFX3P48380 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 AC087499.6-201ENST00000411576 835 ntBASIC14.24□□□□□ -0.13
RFX3P48380 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.24□□□□□ -0.13
RFX3P48380 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 MYCLP2-201ENST00000449268 967 ntBASIC14.24□□□□□ -0.13
RFX3P48380 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
RFX3P48380 RPL13AP25-201ENST00000484130 612 ntBASIC14.24□□□□□ -0.13
RFX3P48380 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.24□□□□□ -0.13
RFX3P48380 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.24□□□□□ -0.13
RFX3P48380 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.24□□□□□ -0.13
RFX3P48380 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
RFX3P48380 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.24□□□□□ -0.13
RFX3P48380 CHCHD2P3-201ENST00000603038 451 ntBASIC14.24□□□□□ -0.13
RFX3P48380 AC008494.3-201ENST00000606615 944 ntBASIC14.24□□□□□ -0.13
RFX3P48380 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
RFX3P48380 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.24□□□□□ -0.13
RFX3P48380 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
RFX3P48380 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.24□□□□□ -0.13
RFX3P48380 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.23□□□□□ -0.13
RFX3P48380 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
RFX3P48380 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
RFX3P48380 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 REXO1L2P-201ENST00000425429 2069 ntBASIC14.23□□□□□ -0.13
RFX3P48380 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
RFX3P48380 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.23□□□□□ -0.13
RFX3P48380 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
RFX3P48380 AC098850.1-201ENST00000419919 790 ntBASIC14.23□□□□□ -0.13
RFX3P48380 AC134915.1-201ENST00000426461 574 ntBASIC14.23□□□□□ -0.13
RFX3P48380 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.23□□□□□ -0.13
RFX3P48380 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.23□□□□□ -0.13
RFX3P48380 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.23□□□□□ -0.13
RFX3P48380 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.23□□□□□ -0.13
RFX3P48380 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.23□□□□□ -0.13
RFX3P48380 AC190387.1-201ENST00000551683 408 ntBASIC14.23□□□□□ -0.13
RFX3P48380 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.23□□□□□ -0.13
RFX3P48380 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.23□□□□□ -0.13
RFX3P48380 SAMD11P1-201ENST00000571429 661 ntBASIC14.23□□□□□ -0.13
RFX3P48380 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.23□□□□□ -0.13
RFX3P48380 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
RFX3P48380 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
RFX3P48380 INTS4P2-202ENST00000614726 2019 ntBASIC14.23□□□□□ -0.13
RFX3P48380 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.23□□□□□ -0.13
RFX3P48380 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
RFX3P48380 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.23□□□□□ -0.13
RFX3P48380 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.23□□□□□ -0.13
RFX3P48380 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RFX3P48380 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
RFX3P48380 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms