Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC092638.2-201ENST00000441105 947 ntBASIC14.8□□□□□ -0.04
CXCL12P48061 LYPLA2P1-203ENST00000447689 696 ntBASIC14.8□□□□□ -0.04
CXCL12P48061 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.8□□□□□ -0.04
CXCL12P48061 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC14.8□□□□□ -0.04
CXCL12P48061 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CXCL12P48061 AC009560.1-201ENST00000620208 434 ntBASIC14.8□□□□□ -0.04
CXCL12P48061 AC073911.3-201ENST00000624401 631 ntBASIC14.8□□□□□ -0.04
CXCL12P48061 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 DDX5-235ENST00000630471 473 ntTSL 4 BASIC14.8□□□□□ -0.04
CXCL12P48061 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 LILRP1-201ENST00000444199 1370 ntBASIC14.8□□□□□ -0.04
CXCL12P48061 AC010491.1-201ENST00000563101 2797 ntBASIC14.8□□□□□ -0.04
CXCL12P48061 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 AC105250.1-201ENST00000509378 2057 ntBASIC14.8□□□□□ -0.04
CXCL12P48061 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
CXCL12P48061 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 BAK1P1-201ENST00000317045 636 ntBASIC14.79□□□□□ -0.04
CXCL12P48061 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.79□□□□□ -0.04
CXCL12P48061 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
CXCL12P48061 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CXCL12P48061 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 KRT8P31-201ENST00000504812 1408 ntBASIC14.79□□□□□ -0.04
CXCL12P48061 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.79□□□□□ -0.04
CXCL12P48061 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CXCL12P48061 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CXCL12P48061 AC105137.3-201ENST00000617588 984 ntBASIC14.79□□□□□ -0.04
CXCL12P48061 AC018629.1-201ENST00000623381 1736 ntBASIC14.79□□□□□ -0.04
CXCL12P48061 AC138466.4-201ENST00000623965 852 ntBASIC14.79□□□□□ -0.04
CXCL12P48061 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC14.79□□□□□ -0.04
CXCL12P48061 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 AP001184.1-201ENST00000637936 376 ntBASIC14.79□□□□□ -0.04
CXCL12P48061 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL12P48061 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.79□□□□□ -0.04
CXCL12P48061 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CXCL12P48061 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CXCL12P48061 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CXCL12P48061 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC14.78□□□□□ -0.04
CXCL12P48061 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CXCL12P48061 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms