Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.85□□□□□ -0.19
MSX1P28360 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 LINC01090-202ENST00000434418 560 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.85□□□□□ -0.19
MSX1P28360 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.85□□□□□ -0.19
MSX1P28360 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
MSX1P28360 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
MSX1P28360 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX1P28360 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX1P28360 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.84□□□□□ -0.19
MSX1P28360 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.84□□□□□ -0.19
MSX1P28360 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.84□□□□□ -0.19
MSX1P28360 REXO1L5P-201ENST00000622260 2098 ntBASIC13.84□□□□□ -0.19
MSX1P28360 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.84□□□□□ -0.19
MSX1P28360 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
MSX1P28360 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 AC092933.1-201ENST00000393644 945 ntBASIC13.84□□□□□ -0.19
MSX1P28360 BCYRN1-201ENST00000418539 200 ntBASIC13.84□□□□□ -0.19
MSX1P28360 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.84□□□□□ -0.19
MSX1P28360 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.84□□□□□ -0.19
MSX1P28360 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.84□□□□□ -0.19
MSX1P28360 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
MSX1P28360 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
MSX1P28360 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.84□□□□□ -0.19
MSX1P28360 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.84□□□□□ -0.19
MSX1P28360 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
MSX1P28360 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
MSX1P28360 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX1P28360 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.83□□□□□ -0.19
MSX1P28360 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.83□□□□□ -0.19
MSX1P28360 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
MSX1P28360 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
MSX1P28360 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.19
MSX1P28360 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.83□□□□□ -0.2
MSX1P28360 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX1P28360 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MSX1P28360 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MSX1P28360 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms