Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
COL6A1P12109 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A1P12109 AL354861.1-201ENST00000445213 355 ntBASIC16.41■□□□□ 0.22
COL6A1P12109 AC024293.1-201ENST00000467930 498 ntBASIC16.41■□□□□ 0.22
COL6A1P12109 AC114947.1-202ENST00000514136 344 ntBASIC16.41■□□□□ 0.22
COL6A1P12109 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.41■□□□□ 0.22
COL6A1P12109 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A1P12109 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A1P12109 CASP16P-204ENST00000635032 809 ntBASIC16.41■□□□□ 0.22
COL6A1P12109 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A1P12109 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL6A1P12109 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL6A1P12109 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A1P12109 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.41■□□□□ 0.22
COL6A1P12109 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A1P12109 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.41■□□□□ 0.22
COL6A1P12109 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A1P12109 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL6A1P12109 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A1P12109 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL6A1P12109 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL6A1P12109 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A1P12109 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL6A1P12109 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL6A1P12109 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 AC004837.1-201ENST00000446267 564 ntBASIC16.4■□□□□ 0.22
COL6A1P12109 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A1P12109 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A1P12109 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A1P12109 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC16.4■□□□□ 0.22
COL6A1P12109 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A1P12109 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 AC012158.2-201ENST00000536546 354 ntBASIC16.4■□□□□ 0.22
COL6A1P12109 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A1P12109 MIR3180-2-201ENST00000581748 88 ntBASIC16.4■□□□□ 0.22
COL6A1P12109 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A1P12109 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 BX088702.1-201ENST00000610784 235 ntBASIC16.4■□□□□ 0.22
COL6A1P12109 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A1P12109 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A1P12109 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A1P12109 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A1P12109 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A1P12109 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A1P12109 AL513523.2-202ENST00000427283 2040 ntBASIC16.4■□□□□ 0.22
COL6A1P12109 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A1P12109 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL6A1P12109 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
COL6A1P12109 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
COL6A1P12109 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL6A1P12109 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL6A1P12109 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A1P12109 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A1P12109 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A1P12109 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A1P12109 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL6A1P12109 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A1P12109 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A1P12109 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A1P12109 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL6A1P12109 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A1P12109 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A1P12109 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A1P12109 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A1P12109 AREG-202ENST00000502307 956 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A1P12109 LINC00634-202ENST00000505157 222 ntBASIC16.39■□□□□ 0.21
COL6A1P12109 AC084752.1-201ENST00000509766 622 ntBASIC16.39■□□□□ 0.21
COL6A1P12109 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A1P12109 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
COL6A1P12109 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A1P12109 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.39■□□□□ 0.21
COL6A1P12109 RN7SL470P-201ENST00000583069 259 ntBASIC16.39■□□□□ 0.21
COL6A1P12109 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A1P12109 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A1P12109 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL6A1P12109 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
COL6A1P12109 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A1P12109 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A1P12109 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A1P12109 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A1P12109 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms