Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 AC013726.1-201ENST00000563747 2285 ntBASIC14.2□□□□□ -0.14
LDB3O75112 AL513477.1-201ENST00000602865 2407 ntBASIC14.2□□□□□ -0.14
LDB3O75112 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 CICP23-201ENST00000605013 2741 ntBASIC14.2□□□□□ -0.14
LDB3O75112 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.19□□□□□ -0.14
LDB3O75112 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
LDB3O75112 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
LDB3O75112 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.19□□□□□ -0.14
LDB3O75112 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.19□□□□□ -0.14
LDB3O75112 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
LDB3O75112 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.19□□□□□ -0.14
LDB3O75112 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 AC112492.5-201ENST00000421897 457 ntBASIC14.19□□□□□ -0.14
LDB3O75112 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.19□□□□□ -0.14
LDB3O75112 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 KRT43P-201ENST00000434019 910 ntBASIC14.19□□□□□ -0.14
LDB3O75112 C2orf27AP3-201ENST00000434123 579 ntBASIC14.19□□□□□ -0.14
LDB3O75112 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 FO681548.1-201ENST00000455617 1132 ntBASIC14.19□□□□□ -0.14
LDB3O75112 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.19□□□□□ -0.14
LDB3O75112 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.19□□□□□ -0.14
LDB3O75112 AC025279.2-201ENST00000569730 653 ntBASIC14.19□□□□□ -0.14
LDB3O75112 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.19□□□□□ -0.14
LDB3O75112 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 AL354718.3-201ENST00000616414 581 ntBASIC14.19□□□□□ -0.14
LDB3O75112 CR382287.1-201ENST00000623954 586 ntBASIC14.19□□□□□ -0.14
LDB3O75112 AL603764.1-201ENST00000636452 321 ntBASIC14.19□□□□□ -0.14
LDB3O75112 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
LDB3O75112 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.19□□□□□ -0.14
LDB3O75112 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.19□□□□□ -0.14
LDB3O75112 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
LDB3O75112 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LDB3O75112 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
LDB3O75112 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
LDB3O75112 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 CICP14-201ENST00000629111 2732 ntBASIC14.18□□□□□ -0.14
LDB3O75112 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
LDB3O75112 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LDB3O75112 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.18□□□□□ -0.14
LDB3O75112 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.18□□□□□ -0.14
LDB3O75112 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms