Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC18.55■□□□□ 0.56
CACNA1FO60840 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC18.55■□□□□ 0.56
CACNA1FO60840 AC124068.2-201ENST00000569473 1109 ntBASIC18.55■□□□□ 0.56
CACNA1FO60840 SNORD3B-2-202ENST00000571722 791 ntBASIC18.55■□□□□ 0.56
CACNA1FO60840 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC18.55■□□□□ 0.56
CACNA1FO60840 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC18.55■□□□□ 0.56
CACNA1FO60840 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.55■□□□□ 0.56
CACNA1FO60840 AC100757.4-201ENST00000626934 759 ntBASIC18.55■□□□□ 0.56
CACNA1FO60840 AC004923.1-202ENST00000642106 209 ntBASIC18.55■□□□□ 0.56
CACNA1FO60840 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC18.55■□□□□ 0.56
CACNA1FO60840 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC18.55■□□□□ 0.56
CACNA1FO60840 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.55■□□□□ 0.56
CACNA1FO60840 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
CACNA1FO60840 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CACNA1FO60840 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CACNA1FO60840 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CACNA1FO60840 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC18.55■□□□□ 0.56
CACNA1FO60840 AL353637.1-201ENST00000451571 732 ntBASIC18.55■□□□□ 0.56
CACNA1FO60840 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC18.55■□□□□ 0.56
CACNA1FO60840 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.55■□□□□ 0.56
CACNA1FO60840 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC18.55■□□□□ 0.56
CACNA1FO60840 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 PGAM1P5-201ENST00000548011 764 ntBASIC18.55■□□□□ 0.56
CACNA1FO60840 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CACNA1FO60840 MIR3619-201ENST00000579667 83 ntBASIC18.55■□□□□ 0.56
CACNA1FO60840 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1FO60840 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.54■□□□□ 0.56
CACNA1FO60840 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 BX284668.4-201ENST00000453917 508 ntBASIC18.54■□□□□ 0.56
CACNA1FO60840 IGHJ2P-201ENST00000454480 60 ntBASIC18.54■□□□□ 0.56
CACNA1FO60840 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC18.54■□□□□ 0.56
CACNA1FO60840 ARTN-209ENST00000479128 471 ntTSL 3 BASIC18.54■□□□□ 0.56
CACNA1FO60840 AC021723.1-201ENST00000486306 515 ntBASIC18.54■□□□□ 0.56
CACNA1FO60840 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC18.54■□□□□ 0.56
CACNA1FO60840 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC18.54■□□□□ 0.56
CACNA1FO60840 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CACNA1FO60840 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CACNA1FO60840 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CACNA1FO60840 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CACNA1FO60840 GSN-209ENST00000449733 2702 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1FO60840 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1FO60840 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CACNA1FO60840 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC18.53■□□□□ 0.56
CACNA1FO60840 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC18.53■□□□□ 0.56
CACNA1FO60840 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC18.53■□□□□ 0.56
CACNA1FO60840 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC18.53■□□□□ 0.56
CACNA1FO60840 AL805961.1-203ENST00000641078 1258 ntBASIC18.53■□□□□ 0.56
CACNA1FO60840 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms