Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
MSH4O15457 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH4O15457 AC015818.8-201ENST00000587907 1519 ntBASIC16.83■□□□□ 0.28
MSH4O15457 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
MSH4O15457 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.83■□□□□ 0.28
MSH4O15457 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 AP001002.3-201ENST00000623482 206 ntBASIC16.83■□□□□ 0.28
MSH4O15457 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH4O15457 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH4O15457 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
MSH4O15457 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH4O15457 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.83■□□□□ 0.28
MSH4O15457 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 CICP14-201ENST00000629111 2732 ntBASIC16.82■□□□□ 0.28
MSH4O15457 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.82■□□□□ 0.28
MSH4O15457 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.82■□□□□ 0.28
MSH4O15457 ACTBP11-201ENST00000436287 1126 ntBASIC16.82■□□□□ 0.28
MSH4O15457 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
MSH4O15457 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.82■□□□□ 0.28
MSH4O15457 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
MSH4O15457 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.82■□□□□ 0.28
MSH4O15457 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSH4O15457 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.82■□□□□ 0.28
MSH4O15457 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH4O15457 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.81■□□□□ 0.28
MSH4O15457 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH4O15457 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
MSH4O15457 TSPY26P-202ENST00000565928 3884 ntBASIC16.81■□□□□ 0.28
MSH4O15457 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.81■□□□□ 0.28
MSH4O15457 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSH4O15457 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
MSH4O15457 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH4O15457 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH4O15457 FAM86MP-201ENST00000340703 885 ntBASIC16.81■□□□□ 0.28
MSH4O15457 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.81■□□□□ 0.28
MSH4O15457 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.81■□□□□ 0.28
MSH4O15457 AC079178.1-201ENST00000420915 656 ntBASIC16.81■□□□□ 0.28
MSH4O15457 MTX1P1-201ENST00000440904 838 ntBASIC16.81■□□□□ 0.28
MSH4O15457 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.81■□□□□ 0.28
MSH4O15457 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.81■□□□□ 0.28
MSH4O15457 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.81■□□□□ 0.28
MSH4O15457 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.81■□□□□ 0.28
MSH4O15457 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.81■□□□□ 0.28
MSH4O15457 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.81■□□□□ 0.28
MSH4O15457 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.81■□□□□ 0.28
MSH4O15457 BX088702.1-201ENST00000610784 235 ntBASIC16.81■□□□□ 0.28
MSH4O15457 AC244157.2-201ENST00000616239 1006 ntBASIC16.81■□□□□ 0.28
MSH4O15457 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.81■□□□□ 0.28
MSH4O15457 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH4O15457 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
MSH4O15457 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.81■□□□□ 0.28
MSH4O15457 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms