Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
SHROOM4Q9ULL8 FAM90A7P-201ENST00000382628 1395 ntBASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 FAM90A23P-201ENST00000400136 1395 ntBASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 AC012508.2-201ENST00000567613 1472 ntBASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 SOD2-202ENST00000367054 815 ntTSL 2 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 AC079112.1-201ENST00000454972 939 ntBASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 AC002472.3-201ENST00000640124 621 ntBASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 AC011270.2-201ENST00000624293 2550 ntBASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC28.26■■■□□ 2.11
SHROOM4Q9ULL8 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 FAM90A2P-201ENST00000511144 1395 ntBASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 FAM90A25P-201ENST00000528404 1395 ntBASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 AC023090.2-201ENST00000625182 2110 ntBASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 NME2-201ENST00000393183 568 ntTSL 2 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 NAT9-211ENST00000580632 799 ntTSL 3 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 FO393412.1-201ENST00000619841 382 ntBASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 LILRP1-201ENST00000444199 1370 ntBASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM4Q9ULL8 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 OR2K2-202ENST00000374428 1038 ntBASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 HPGD-203ENST00000422112 805 ntTSL 2 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 NSD1-211ENST00000511258 809 ntTSL 3 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 AC100827.2-201ENST00000563214 1194 ntBASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 SHC1P1-201ENST00000425230 1745 ntBASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM4Q9ULL8 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 PPT1-215ENST00000641471 2368 ntBASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 PIN4P1-201ENST00000451079 396 ntBASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 CAP2P1-201ENST00000557743 1390 ntBASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM4Q9ULL8 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms