Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AL359711.2-201ENST00000563105 872 ntBASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 DUX4L47-201ENST00000566374 394 ntBASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AC133539.2-201ENST00000604757 467 ntBASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 TMEM261P1-201ENST00000604899 340 ntBASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AC004233.3-201ENST00000607794 1269 ntBASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AC008761.3-201ENST00000624803 892 ntBASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 AC067750.1-201ENST00000608826 6545 ntBASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS29Q9UBQ0 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 AC022616.1-201ENST00000518688 554 ntBASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 AC027796.2-201ENST00000575326 344 ntBASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 AL132655.2-201ENST00000596276 594 ntBASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS29Q9UBQ0 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 BX640514.1-201ENST00000583223 1918 ntBASIC14.47□□□□□ -0.09
VPS29Q9UBQ0 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms