Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 AC243960.2-201ENST00000600996 747 ntBASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 AC138696.2-201ENST00000607376 223 ntBASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 MIR6787-201ENST00000616675 61 ntBASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
CLCF1Q9UBD9 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CLCF1Q9UBD9 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 MIR663B-201ENST00000408361 115 ntBASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 RN7SKP175-201ENST00000408472 289 ntBASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 HIST2H2BB-201ENST00000449108 381 ntBASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 AC104306.2-201ENST00000451877 341 ntBASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 AC099548.2-209ENST00000480264 625 ntBASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 GPR182-203ENST00000622922 591 ntBASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 AL008638.5-201ENST00000623814 1298 ntBASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLCF1Q9UBD9 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLCF1Q9UBD9 MIR1247-201ENST00000408206 136 ntBASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms