Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 HTR5BP-201ENST00000430851 1154 ntBASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 AC004066.1-201ENST00000502488 802 ntBASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AL080243.2-201ENST00000418783 582 ntBASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 GPS2P2-201ENST00000430745 888 ntBASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 TPM4P1-201ENST00000436100 807 ntBASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 SPDYE14P-201ENST00000442619 822 ntBASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AC026150.2-201ENST00000564693 1156 ntBASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AC000095.1-201ENST00000603208 874 ntBASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 LINC01115-203ENST00000606068 577 ntBASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 ST20-AS1-201ENST00000560255 4223 ntBASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 AC138969.2-201ENST00000532739 9932 ntBASIC14.71□□□□□ -0.05
CCDC28BQ9BUN5 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28BQ9BUN5 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
CCDC28BQ9BUN5 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
CCDC28BQ9BUN5 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28BQ9BUN5 AC016397.2-201ENST00000624848 1985 ntBASIC14.71□□□□□ -0.06
CCDC28BQ9BUN5 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.71□□□□□ -0.06
CCDC28BQ9BUN5 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
CCDC28BQ9BUN5 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms